HsaINT0025605 @ hg38
Intron Retention
Gene
ENSG00000165698 | SPACA9
Description
sperm acrosome associated 9 [Source:HGNC Symbol;Acc:HGNC:1367]
Coordinates
chr9:132887369-132890031:+
Coord C1 exon
chr9:132887369-132887571
Coord A exon
chr9:132887572-132888289
Coord C2 exon
chr9:132888290-132890031
Length
718 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GGCCCCCTGCCGTCCTGCAGATA
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTGCAGAGCTACATGGAACACTACTGCAACAGCTCCACAGACCGGCGGGTTCTGCTCATGTTCCTGGACATCTGTTCAGAGCTGAATAAGCTCTGCCAGCACTTTGAGGCCGTGCACTCTGGCACCCCAGTCACCAACAACCTCCTGGAGAAATGCAAAACCCTCGTTAGCCAAAGCAACGACTTAAGCAGCCTCAGAGCAAA
Seq A exon
GTAAGTCCCTCTGATGCTGCTCTTGAGGCCCCGTGTGTGCCTGTGGGGAGGCCTCTGTCCTGCTTCTTTCCTGTTGCCTGGATCATGGTGCTCCTATTAGACCACCCCGGGCAGGAAATCCCAGTCTCCACTCATTTATTGGAATGACTCGGATTCAACAAAACCTTTTCTTTACAACCATCGTAGACATGGCAGGACACCAGGTGTCTCACGGGTGTTAGCACCAGGCAGGTGGAGAAGGGGGTGTAGAGCCCAGAGCAGTTGCCCCCAGAAGCCCACAGAGATCCTCACTGACATGCAAAGAAGTGGACACCAGAGCCGCCTCCCAGGGGCAGCAGCACTGGCACTGAGGGCTCCTCATCCTGACAGCCCGGGAGCCTGCAGCACAGTGGGCCAGAGCCTGGGGAAGCTCTGTAGATACCAGGGTGAGAAGAGCCAGAGGGATGAGCCAGCCAGTTCCTCACCCCTAACCCAGGTTTCTACGGACCATGGGGCAGTGGTTTGCATCTCCTGTCTTTCACACCAGAATTACCTGGGGCTTGTGGCACCCCAGGCCTGGTCTGCCAGAATCTCTGGGGACAGAGCGCCTCAGCGTGCTGTGTGTCCAGTTCTAAAGCCTCCCCAGGTGACTCTGCTGTGCCTGAGGTGTGGCAGCTGCTTGCCACGGCATGGCAAGTCCCGGGAGCATGGGTTCACCTGGCCCCCTGCCGTCCTGCAG
Seq C2 exon
ATACCCTCATGATGTGGTGAACCACCTCAGCTGTGACGAGGCCCGGAACCACTACGGCGGCGTGGTCAGCCTCATCCCCCTCATCCTAGACTTAATGAAAGAATGGATCGCCCACTCCGAGAAGTTGCCGCGCAAGGTGCTGCAGCACGTGAGTGAGCCCCAGGCGCACCAGGAGAGCACCAGGGGAGCCGCTCGTCCTGCCCAGGCCATAGGGACCCAGCCCAGGGCCACTAAACACAAGTGTAGACAGCTCACAAAAGCCAGCCTCAAACCCAGGGGATGTTCAAAACCACCCTGGAGGCCTCCTGGTGGGAAATTGTAACTCAGAGCCAGGAGCTCCGTCGGCGGAGAGCTTTGCTGTTTAATTTGGATTTTACTGGTTGGTCCTTTTTTCACTGGTACCCATGGACCCTGCCACTTACTAACCCCAAGGGAATCAGCCAATATATTACTGAGACTTCCTCTCTCTCTTCTTGCTTTAACTTCTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCGGTGGCGCAACCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCACCACCTCGCCTGGCTAATTTTTTGTATTTTTAGTAGAGACAGCGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCATGATCTACCCTCGTGATCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACAGCGCCCGGCCCTCTTGCTTTAACTTCTAACATTTCCACTTCTAAGCATCAGGCTCCGTGCTGATGAAGAGGAAACCCACTTACAGAAGTTGCCCAAACAGGATGGTGTGGTAGAGGGTCCCAGGAGGGCACTGAACTGTCACCTAGGTCCTCTTTGAGCCACATCCGGCTCCAGTGCCACGCCTGTCCCTGCTGCGGGCTGCAGTTTTGCAGAGGGTGATCAAGCTGGAGACCATCTGCTCCTTGCCCCACCACCAGCCCCAACTGTAGGCAAGGCACACGCTGTTTGCGAGCCAGGGATGCTCCCCTCCAGGATGGAGTGGGGGTCGGCATGTGGAACTCAGCGTGTTTATTTTTTTATTTTTTGAGATGGAGTTTCACTCTGTCTCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCACCTCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGCGCCCACCACCCCACCTGGCTAATTTATATATATATATATTTTTTAGTAGAGACGGGGCTTCACCACGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAACTGGTCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACGGCACCTGGCCAGAACTCAGTAGTGTGTTTAGTTCTCTGGACCACAGCCAAAGGGGAATAAACTCACCTTTCCTTCGCCTTTACTTGGGAGAGGGAGACCATGACAGAAGCCAGAATTCTGATTTTGTGGCTCCTGAGCAAGGGCGATGACCTGGTTTTCACAGCGTAGTCGAACCCCAAACATTGTAAAATGTGTCCCTGGCTTCTGAGCTTGCCCAAAGTAATGTCTGACTGTTGGTTTTTCCCTTCACAGGGGACGACTTAGCTTCTGTATTATTGTTGCTTCCTCAGGGGGAGACAGTCAAGAATAAAAAGTATTCTACCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165698:ENST00000372136:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.522
Domain overlap (PFAM):
C1:
PF151201=DUF4561=FE(40.1=100)
A:
NA
C2:
PF151201=DUF4561=PD(32.6=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACCAACAACCTCCTGGA
R:
CTGGGTTTGAGGCTGGCTTTT
Band lengths:
351-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development