HsaINT0025659 @ hg38
Intron Retention
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133404789-133406096:+
Coord C1 exon
chr9:133404789-133404929
Coord A exon
chr9:133404930-133405251
Coord C2 exon
chr9:133405252-133406096
Length
322 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
CCTTCCTGCTCCACCTGCAGAGG
3' ss Score
10.23
Exon sequences
Seq C1 exon
AGCTGGCGGCCTTCAAGGTGGTGGTGCAGGAGGAGGGCGGCAGTGGCCTCAGCCTCATCAAGGAGACCTACCAGCTCCACAGGGACGACCCGGAGGTGGTGGAGAACGTGGGCATGCTGCTGGTCCACCTGGCTTCCTATG
Seq A exon
GTGAGAACCCCTTCTCACCTCACACTCCCTAGAGCCCAGCGGTCAGGGGTGCCCCGCTCCCCCTATAACTGACAGGGAAGGAGCACATGGAAGGTGGGCTCAACCCCACTTCTCGGCCCACTTAAACTTCCCACTCATTTGGCATCTTCTGAGCACCAGGGGTTGTCCTGGCTGAGGGTGACGCTTGGGGCTCCGGAACTGCAAGGTGGCTCTGTGCATGCCAAGCCCAAGGGGGAATGTGACCCACTCTCATCCTTCTGGGGCTTCTGGCAAGGGGCACAGGAAGGACTCTGGCCTCAGGACCTTCCTGCTCCACCTGCAG
Seq C2 exon
AGGAGATCCTGCCGGAGCTGGTGTCCAGTAGTATGAAGGCCCTGCTCCAGGAGATCAAGGAGCGCTTCACCTCCAGCCTGGTGAGTGACAGCAGCGCCTTCAGCAAACCAGGCCTCCCTCCAGGTGGAAGCCCCCAGCTGGGGTGCACCACGTCTGGGGGACTGGAATAGATGTTTGTATGGAACTGACCTTGATCTCCACGTGTATAGTTTTCAAGACTGCTCTCCTGCCTGCCTATTATCCCATCTCTATGACTGGGCCAAAATCAATCTTAAACGGGAGGGGTAATCAGACCTCTCCAAAGAGTTTCCTGTCCATGACTGCTGGATTGAGTCACATGAGTAACTGCTCCTGGACCCGGGGACTGTCCACGAAAACTGACTTGCCTGCTTCCTCCTTCCAGGAACTGGTTTCTTGCGCGGAAAAAGTGCTCTTGAGGCTGGAGGCAGCCACCTCTCCCAGCCCACTGGGTGGGGAAGCAGCTCAGCCCTGATGCGGGGGAGAAGACAGATACCCCACAGGCCCCTCCCTCCACGTGTGCCCTCTCCCTGTCCTTCCTTTCCATGGGCCACTGTTTCCCTTGGGGTGGGGGGAAGGGTCATCCAGCACCAGAATGCGCATCTCACACTCCTCTTAGGTGACTAATAAAGAGGCCCAAGGCCAGTTTCTGCCTTAATCATTTCTGGCAAGAGGCTGTGACTGGCCAGTGGGATACTTAATTCTGCAGTCTCTATAGACCTCGCCCCTGGACAGAGCAGTCCTTCCAGACCATTCTAGATGAGAGTCAACACTGAGCCTCCACAGGCTCCATTCCAAGTAAACATCTGCATTTATTTTAAATCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870:ENST00000371957:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGACCTACCAGCTCCAC
R:
TGGCCCAGTCATAGAGATGGG
Band lengths:
344-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development