HsaINT0027189 @ hg38
Intron Retention
Gene
ENSG00000118200 | CAMSAP2
Description
calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr1:200847210-200847709:+
Coord C1 exon
chr1:200847210-200847292
Coord A exon
chr1:200847293-200847639
Coord C2 exon
chr1:200847640-200847709
Length
347 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTCTTTTTTGCATTTGAAGGAG
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGGGGAAGGAGCTACATTTACACAGTCTCATCATCATTTGCCTTCTAGGTATTCACGTCCCCAGGCTCATTCTTCAGCCTCAG
Seq A exon
GTAATATATTTGAAAAAGCCTAGGAAAATACTCTTTTAAGTAGGTTACCTGGGAAATGATTGACAGTAAATATAAATAAACAAATATCCAGGGTTTTTTTGTGTGTGTGTGTGTGTGTTTTTTTGTTTGTTTGTTTGTTTTCTGAAAAATGGCTATTATAACACACTAAAAGCATGGTCAGTTTCACTGTGGTTGCTTTTCTTGATAAAATTATCTCTAATTCTCCTTATGTACCTATTTAATTTGTATTGCTATTAATGAATCCTCAAATACATGAAATCTCCTAAGTTGCTATAAGTTAATTTTTTTACATGATTTCAATGGCTTTTTCTTTTTTGCATTTGAAG
Seq C2 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGGACATGGCCCAAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118200:ENST00000236925:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=NA C2=0.142
Domain overlap (PFAM):
C1:
PF116003=CAF-1_p150=FE(16.3=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development