HsaINT0027428 @ hg19
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31425000-31426005:-
Coord C1 exon
chr2:31425936-31426005
Coord A exon
chr2:31425119-31425935
Coord C2 exon
chr2:31425000-31425118
Length
817 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTGTGTGCTGTCTGACTTAGGAG
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAGCTGCACAGCAATCCCCAGTTTTATTTTGCCAAGGCCAAAAGGCTGGATCTGTGCCAGGGGATAGTAG
Seq A exon
GTAAGTTTGCACAGCCCCGAGAGACAGACACTAGGCTGCCTGCTGACCAGGCCTGGCCAAGACAGAGTGGTTGATAAAGAAGAGAAGCCAGAGATCCCCACTGGAGAGAGGCCCAAAATGGCTATTCACTGGCAAAACGCTACCTGGACATGTTCTGTTCTTTGCCGTGAAGTTTATAAAAACTGGTCCTCTGGGGATGCGTGGGAATGCCATACCCTGCCTAAGTCCTCACATAGTCCTCATTACCAGTTTACAGGTCTAAATTTAAATTTGGAAAATGTGCTCACTCTATTTTAGTTCCCACAATGGGTCCTTCTTGAGACAGCAGTCATTAGCCTCGCCAGAATAGGATCAAAGCAGATCTATCCTCAACTCTACCTTTTTAAAATAGTAAATTGGTCATCAGGGAAGGCTCAGCCAAGTCCAGTGATACCCATTTCACAGACAGGGAAATGGAGTCCTGAAGGATTGAGGCTTTCCCAGAAGAACATAAATCAGTTTCAGAGGCAAGATTTGGAAAAAGTGAGTGGCGTTGAGGTCCCAATTCCTGAGGATAGGGCATTCAGGAATCTAAAATTCCTGGTCCAGATCTAAAATCTGGCCCAGGAACATGGCTCTGGTTTTGGGGTCAAGTTGGATTTCAGCCAATGCTCCCAGCCCCACCTCTGCTCACTCATCATCCGCCTTCCCAGTATATAATTCCCTTCTCCTAAACTGGGCTACAAGCCCAGAGAGGGTGGCCATTGGGACCGGGCATTTTCTGCAGTCATAAAGTCCCCAGTAGATTCATGCAGATGCTGTGTGCTGTCTGACTTAG
Seq C2 exon
GAGACTGCTGGTTCTTGGCTGCTTTGCAAGCTCTGGCCTTGCACCAGGACATCCTGAGCCGGGTTGTTCCCCTGAATCAGAGTTTCACTGAGAAGTATGCTGGCATCTTCCGGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-CAPN14:NM_001145122:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(23.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAGCAATCCCCAGTTTT
R:
GAACCGGAAGATGCCAGCATA
Band lengths:
182-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)