HsaINT0027758 @ hg38
Intron Retention
Gene
ENSG00000187796 | CARD9
Description
caspase recruitment domain family member 9 [Source:HGNC Symbol;Acc:HGNC:16391]
Coordinates
chr9:136371324-136372094:-
Coord C1 exon
chr9:136371895-136372094
Coord A exon
chr9:136371462-136371894
Coord C2 exon
chr9:136371324-136371461
Length
433 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TAGGCCTCTCTGGCCCGCAGGTG
3' ss Score
8.31
Exon sequences
Seq C1 exon
CCTGCCTGCTGAGGCCATGTCGGACTACGAGAACGATGACGAGTGCTGGAGCGTCCTGGAGGGCTTCCGGGTGACGCTCACCTCGGTCATCGACCCCTCACGCATCACACCTTACCTGCGGCAGTGCAAGGTCCTGAACCCCGATGATGAGGAGCAGGTGCTCAGCGACCCCAACCTGGTCATCCGCAAACGGAAAGTGG
Seq A exon
GTCAGTGTTGCCCCGCGGGCCCCAGGCCCCAAACCCAACCACAGAGTCAGCTCGGAGGTGGCTGCACGCTCTGCCACCCTGACCCTCAACCCCAGGAGAGCCCCGCCTGGCTTTGCCCCTGGCCTCTGACTGAGGCCCAACCTCAACCCTGGCACGTGGCCCGTCCCCCAGCCTCTCCTGCCGGCTTGGTGCTGCCAAGAGGGGCAGCGGGGCTCCCACCGCAGCGGGGGCTCCTGAGACAGCCAAGGGGCGGGTGGGCAGCACTTGGTCCCCAGCCTAGTACCAAGACCCGCAGGGTACCTCATCCAAGACCCAGACCACGGCACACCTCATCTGCATGCCAGCCTCCACCTGTCCCTGCCCCCAGGCCCACCCACCCCAGCCCTCTGCCTCGCCTGTGCCCCGCCCCCAGTTAGGCCTCTCTGGCCCGCAG
Seq C2 exon
GTGTGCTCCTGGACATCCTGCAGCGGACCGGCCACAAGGGCTACGTGGCCTTCCTCGAGAGCCTGGAGCTCTACTACCCGCAGCTGTACAAGAAGGTCACAGGCAAGGAGCCGGCCCGCGTCTTCTCCATGATCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187796:ENST00000371734:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061916=CARD=PU(58.6=82.3)
A:
NA
C2:
PF0061916=CARD=PD(40.2=74.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGAGGCCATGTCG
R:
CGATGATCATGGAGAAGACGCG
Band lengths:
334-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development