HsaINT0028686 @ hg38
Intron Retention
Gene
ENSG00000137944 | KYAT3
Description
kynurenine aminotransferase 3 [Source:HGNC Symbol;Acc:HGNC:33238]
Coordinates
chr1:88953063-88955225:-
Coord C1 exon
chr1:88955149-88955225
Coord A exon
chr1:88953153-88955148
Coord C2 exon
chr1:88953063-88953152
Length
1996 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTATCTTTTCCTTTCCCAGCTT
3' ss Score
9.5
Exon sequences
Seq C1 exon
CTACTTTTCCAGGTATGTGGGAGAGAACAATAACAATAGGAAGTGCTGGAAAGACTTTCAGTGTAACTGGCTGGAAG
Seq A exon
GTAAGATGAGTAAGAATTTAATTGCTTAAAAATAGGCCTGTATATTATTTATTTTTTGTTGAGTGGTTTGTGTTTTAAATGCTGGCCAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTAAGGCAGGAGGATCACTTAAGGCCAGGAGTTCAAGACCAACCTTGGCTACATGGTGAGACCCTGTCTCTACAAATACATTTTTTAAAAATTAGCCAGGCAGGGTGGTGCATGCCTGCAGTCCCAGCAACTTGGGAGGCTGAAATGGGAGGATCACTTGCGCTCAGGAAGTTGAGGCTGCTGTGAGCTGCGCTCCAGCCACTTGGAGACAGAACAAGACCATCTTTAAAAAAATAATGAAATAAATAAGTAAACAAATAAATGAATCATTGCATACATATTCAGTTTATATAGATTTTTATACCTGGTGATCTTTGCTTATCTCTTGACTTATTTGGCTTTCATGTTGAGTTTTATCCTTTTTGAGACCTAATTATTTCTTTAAACATAAGAAAAATTAGGTCATTTTCCCTTTTATAAGTGATCAACTAATGACACCTTTTTCTTTGCAAAAAAGTGTTCAGATTGCTGCATATTAATATAAAAGGAGAAAAATAATAGTAGCTAATATTTTGGCAGGTTCTAAATATATACCAGGTTCTAAATGTTTTACATATACTAATTTCTTTCATTCTCATAACCACACTATAAGGTGGGTATGATTAGTGTCCTCATTTTACAGATGACAGAGCTAAAGCACAGAGAAGTTAAATGACTTGCCTGAGATTACCCAGCTAATAAATTCAAGCCTGTACAGGAAGTCTGGCTCCAGAATTCATGCACTTAACCACTGTATTATTTATTACAATAATTTATCCAGTTAAAACCCAATTCTCTTCCAGCCTCACCTCTCCTGAGCATGGGTAAGAAGCAGGGAGCATCGGCCAGGCGTGGTAGCGCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTAGATCACCTCAGGTCAGGAGTTCTCAACCAGCCTAACATGGTGGAACCCCATCTCTACTAAATACAAAAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCACCTGTACCTGGGAGGCGGAGGTTGAGTGAGCCGAGATCCGGCCATTGCACTCTAGTCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAGAAGAAGAAGAAGAAGGAGGGAGCATCAAAACAAAAATTAGGCCTGGAGAATCAAGTCTGTATGTTTTAATTACAAGTCCCTTAGGCCCTCTTTCAGAGTTACTTTAATCTGTAATTCAAACAAGCTTTGTTACCAGTTTTTAATCTTCCAGAATATCAGAAGTAGCAAATTATTAGAAAGGAAAAGGCTAATAATGATCGCCGGCTGTTTACCTTCAGAAAGGCAGAGCTTAGTGATGAAAGCAGAGTTTAATGACTCCATTTGGAAGCTGTTCCTTGAAAAGAACACCATTGAAATGATTCTAAGTACTAATACTGTACTACTTTCATAGTGTGAACTTTTTTTTTTTTTTTTTTTTTGAGATAGAGTCTCACTCTGTTGCCCAGGTTGGAGTGCAGTGCTGTGATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTGAGGTGATTCTCCTGCCTCAGCTTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCATGCCCAGCTAATTTTTTTGTATTTTTATAGAGACAGCATTTCACCATGTTGACCAGGCTGGTCTTCAACTCCAAACCTCAAGTGATCCACCCACCTCGGCTTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCATACCCAGCCAACATTTTAGGATTGTATATATTTAACAATTGCACTAAGTTTAAACTGCTGTCTCAGATTTGTTATATACAATTAGATTTTCTGAAATCTTTTATCTTTTCCTTTCCCAG
Seq C2 exon
CTTGGCTGGTCCATTGGTCCAAATCATTTGATAAAACATTTACAGACAGTTCAACAAAACACGATTTATACTTGTGCAACTCCTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137944:ENST00000370491:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(10.8=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development