HsaINT0029132 @ hg38
Intron Retention
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77274482-77278840:+
Coord C1 exon
chr7:77274482-77274652
Coord A exon
chr7:77274653-77278751
Coord C2 exon
chr7:77278752-77278840
Length
4099 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CATTTTTTTGTACATTTCAGCAA
3' ss Score
7.33
Exon sequences
Seq C1 exon
AAAATTATATCAGAAATGGAGTCTAAGTTAGTAGAACAACAACTTGCAGAAGAAAACAAGCTTTTAAAGGAGCAAGAAAACATGAAAGAGCTAGTAGTCAACCTTCTCCGCATGACTCAAATCAAAATTGATGAAAAGGAACAAAAGTCCAAGGATTTCCTGAAAGCTCAG
Seq A exon
GTAACTGCATTTTTTTAACCATTCATTGATAACTACAAGAGTTCAGGGTAGCCTCATTATAATGCCACGTGCATTAGGACATGGATGAAGCTAGAAACCATCATTGTCAGCAAACTATCGCAAGGACAAAAAACCAAACATTGCATGTTCTCACTCATAGATGGGAATTGAACAATGAGAACACTTGGACACAGGAAGGGGAACATCACACACCGGGGCCTGTTGTGGGGTGAGGGGAGCGGGGAGGGATAGCATTAGGAGATATACCTAATGTAAATGATGAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATACGTAACTAACTTGCACATTGTGCACATGTATCCTAGAACTTAAAGTATAATAAAAATATATAAATATTAAAAAAAGAACTGGAAGGAAACTCAAAAAAAAAAAGAAAAGCTATACAATTGACCCTTGAACAACATGGATTTGAACTGCATGGGTCCATTTATACACAGATTTTTTTCAACCAAATGCAGATCAAAAGTAGAGTACTCACAGAATACAAAACCTGCAAATATGGAAGGCCCACTTTTCTTACAGGTGAGTTCCACAGGGCCAACTTTGGGACTGCTTGAATATGCTTGGATTTTTGTATTCTCAAAGGGTCCTGGAACCAGTTCCCTATGTATACCAAGGAACCACTATAACTGTGCCTCTCCTTCAAGTACCAGTGACTATAAATCTTCCCTAAATGAGATTCAATCATGCACTGAAAGATAGTCCCAAGATTCAATTAACAGTAATCAACAATTTAGATGGGAAAGGAGATCATTGATAATGATCGGAGGATTTGAACAGATGGCAATTTCAGTAAGAATAAAGTGGGTGCCTCCAGTGGACAGGGCTGGCAGCTGCATAGGCTGCAGATATCATTTAGTTTTCACTCCCATCTCAGACTCCACTGTGATTTGTCCAGGAACAACTCAAGAGTGGTAGCATTAGGTAACTGTCCCTCCCAACTTCATCAAGACAGCATCATTTAATCGAATGCCAGATACCCTTAGTTGCTTCATCACACCATGATTTTCCTGGGCCTCCTACAAAGTGCCAGTGCAACATTCCCCCCTAAAATCAACAATAAAACAAATGGTAAGGCAGCACTCCTGTCATGCAAGCTAAAATTCTACCATTAGAATTGTTTATTCCATATAAGGATTATGTCCAGATCATGCCCAGAAGCTCCCTGTTAAAAATAAACAGGATATTACATATTACTAAAATAGAAGAATTTATCAGGCCAGGCATGGTGACTCATGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCGGGTGGATAACTTGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTGAAATACAAAAATTAGCCAGGCATGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGACTGAGGCAGGAGAATCGTTTGAACCTAGGAGGTGGAGGTTGTAGTGAGCCAAAATCGCACCACTGCATTCCAGCCTGGGTGACAGAGCGAGACTTCCTCTCAAAAATAAAAAAAAAAAAGAATTTATCTCATGACCCAGATGTGGTCTGTTTGGTCTGTTTCTAAGCACATCCCTTGTTCTCAGTCTAAGTAAGGATTTACATAGAATGGTATTTCTTCTCATTCTGCAGAAAGAGCTCACTCACGCCAAAGCATTAGTGAGCAATGAGGTATGAAGTAGATTTTTGCAAAAAAGAGAAGATCTACATTGCACAACCCACTGCAGGCACTTCACATCCCCCTTTCACTGTTTATTTTTCTACTTTAATATTTAAGAAACTAAAAGAAGTTCAGGATGGCTGGCACATGGGAAGATGGGGAGAAAGGATGTCAAATAGTGAGACCAGAGAGCGGGACAAGTCAGATGATGAAAGTCACTTAATCCATGTTAAACAATTTAGACTCCATAATGAAGGCTGCAGCAAGAGTGAAGTTCATGGAGTAGTTGGGTTTCACTAGGTAAAGAAGTGGTCAGGGAGGACTGGATGAAAGAAAGGCAGCTTCAAAGCACAGGGTGGCTAAGCGGGTAAGATGCAGGAGCAGGACAAGGAGAGGAGAGAGGAGAGATGTGGGAAGATCATCTTGGGCCAGGAGCGGTCTCTCACGCCTGTAATCCCAACACGTTGGGAGGCCAAGGCGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGCCCAACATGGTGAAAGCCCATCTCTACTAAAAGTACAAAAAATTAGCCTGGCGTGGTGGTGGGCACCTGTAATCCCGGCTACTCAGGAGGCAGAGGCATGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAACGAAAAATAAAGAATAAGAAGGAAGGAAGGGAGGGAGGGAAGGAAGGAAAAGAAGGAAGAAGAAAGCCATCTTCACCAAGTCAGGGTCTGGGACAACTTGGTGTTGGCTGGGAAGATCCCACTCAAGTGAGTCTTTCCTAGTTAGAAACTTCCTCCCTTTTCTCTTTAGAAATTACAGAAACACCAGAGGTATACTTATTTGTTATAAGAAACACTGATCCGTTTTATGAATTAGATAATTTTCAATTAATTTCAAAAACTGATATACATGTATATCTATGTGTGACTAATCTATGTAAAGCAAACCTCATTATTAAATGAGCTAATTTGTATTAAACCAAAATAGACAATTCTTCTTGAGATACAGAAATTGATAAAGGACAAATGTTTATCCCTTGAGTATTTTTAGCATTAGGAATTAGTGTGTTAAACATTACCTGTACTTAGCTGCAGTTTCCATAAGAAGGCAATCTTTTATGTTCACATTGCATCCACATCCCTAAAGACAAAGGTGAAGAAAAAAAAACAATGTCACTATCACCCCTAAGACAGAATAGATGACACTACATTTTCCCATCTGTTTTATTATTCATGTGTACAGTTACTTAAATATTCGTTTCTTCCTGACCCCTATTCTCATGGAGAACAGCATTAGAAAAATGCTACACATCAATCTTGGCTCTATGGCTAGTTTCTTTCAAATCACTCATACCAAAAGGGCTTTGCTCTCAGTCCTTGAGAGAAGGCTGACAAACTCTTTCCTCTGGTTTACTACCAGCAAATCCTTCATTTTTGAATATGTTTCTTATCCCAGATGCAAGAACCAGTATCTTTTGATTTGAAGAACATAACTAGTGTATTTAGCACTTGATATATTTTTTAGAACTCTAGAAATATAACTGCTTTCTTTTAAAATATTTATGTGTAACACCTCCTTACAGCTGATCTCAATATGATGCCTTATTATGTAGGAAAACACCCCACATACAAAAGAATGGAAAGCACTTTAAAATCATTGCTTCAGTCTCTGACAAAACACCACAGAGGGTTCAGTTTATAACACTCACCAAAACTTACTAGGAATCCTCTTCTCTCATCTATTTTCCATAAACTACACTCACCCAGTCCAGCTGTGTGGTTCAAAATCACTCTTCCTCTCTCTCAAAAGTTGTCCAAACTTTTCCTCAAACCCAAGCCATGCAGGCTCTTTGCGTTTTCTCTTCTCTCGTTTGTTCTCTTCTTTAGGTAACAGTTAACAGTTTGTCTTAGCCAATGTGAATCAGTTCAGCTAGCCAGGGAATTTTCAGATCTCTTTTACCCTTCACCCTGATCTGTACAACCCAGCAAGCCAAGAAATAATTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGACAGGATCTTACTTTGTCGCCCAGGCTGGAGCGGAGTGATGCAATCATGGCTCACTGCAGCCTCGAATTCTTGGGCTCGAGCGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCACACCACCATACCCAGATAATTTTTTTATTTTTGTAGAGATGAGGTCTCACTATGTTGCCTAGGCTGGAGAATTGTCTTTAATGGAAGGGAATGATGTGGGATAAATCTGGGAGTGTTCATATGTTGTTATTTATTTCACATTTTTTTGTACATTTCAG
Seq C2 exon
CAAAAATACACCAACATTGTTAAAGAAATGAAAGCAAAGGATCTTGAAATCAGGATACACAAGAAGAAAAAATGTGAAATTTATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205:ENST00000285871:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development