HsaINT0029138 @ hg38
Intron Retention
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77287440-77293200:+
Coord C1 exon
chr7:77287440-77287577
Coord A exon
chr7:77287578-77292951
Coord C2 exon
chr7:77292952-77293200
Length
5374 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TTTGGGCTCTTTAATTCTAGATG
3' ss Score
8.37
Exon sequences
Seq C1 exon
CTGGAACTACAACTGGCCAAGAAGGAGGAGAAGCTGCTGGAGAAGGATTTCATCTATGAGCAGGTCTCCAGGCTCACAGACAGGCTCTGCAGCAAAACTCAGGGCTGCAAGCAGGACACACTGCTCTTAGCCAAGAAG
Seq A exon
GTAGGCCTGAGACCCTGCCTTTTCCCTTCTGCCCCTGCTCCTTTATTACCTTTTATTTTCCACAGACCGACAGATTTATTGAGAGAAGCACTGGAGAGATTAGGCTTTATGACTAGGGGAACTTAGAAAAACGAAAGGATGACTCAGAGAATTGTCCAAAATGTTTCAATCTTATTCCCTGAATTAATTCACTTCACGGTGGCAAAACCTAGGCTTTTAAATGACACTATACAAGTTTCACTTACCAAGGCAACTACCCAAATATGACAGTTATTATCTTTGTATTTCATGCACAAAGTTAAATCCTTTTTAGTTCCTTTTAAGTGGAGCGCCTCACTTATCCAGTGATCTTAGTAGGGACTGCTCCAATCCAGAACTCAGCCAGAACCCAGAAATTGAAAGGGACTGATAAAGAGAAATGCAGTCACACAACACCCAGACCAACTGCACCATGGAGGTGCCCACCAGGCACCACTAGTGAGGAAAGGCCAGGAATACAGAACCCCCTAATTTAATAAGCGTAAGAGACCAGGACAGCAGATCCAGAGCCTCAGGGTCAGGGTGGGACTGCTAGAAGCTGCACTGAAAGGAGCAGCCAGCAGAGCCCCTAGAAGTCCCCCTGGACTCCCAGCATGTTGCATGCTAGTTACCCTGGTCTCTGTAACAACCTGCAATGAAGAGGTGAAGGCTGTCTATTAGTTCGTTTGCATTGCTGTAAAGGAATACCTGAGGCTGGGTAACTGATAAAGAAAAGAGGTTTATTTTGGCTCATGGTTCTGCAGGCTGTGCAGGAAGCATGGTGCCTGCAGGTCTTGCCAGGCTTCCTGTGGCTCTGACTCCTGCTTCCAACAAAGGTTCATTTGGGGAATTGCCCCATCAGCCTGTACACCCATTTCTGGGTCATGTCCGTGCAGGCACGGGACTCACTCCTTCCTCAGTCTACCCCTACACAAGACCATTCATGCGAGGCCTTTCATGCATACCATAGAGCCATCAGAGGACTGGCCACTCACCTGGCCTCTGGGTTCCCTGGAGCATCCCGTCAATGCAGAGAGTTCAGCCAGTCAACAGTAATTACTGAACACCTGCTATGTGCTACTCTCATGCTAGGCATGAGTTCAGAAACAAAGAGGAAGGGACACATTGTTTACACCATAGGAAGCTCATAGGGTCTAGTAGGGGGAGACAGATGAAAACAGATAATGGTAATACCCACACCAGAGACTGTGGGCTCCTGAGGGCAGCAGCTGTTCCTCGTTCTTAATTTCTCCAATGCCTAGCATGTGCCAGACTCTAGAAAAACACTTCAAGGATGAGTAATCATCAGTTCTGTTCTAGAAGCACATGTGGAACACTAAACAAGAAATGATTGTAAATATTAGACTATCTTTGCCATTTTTATTTGACTATTATGCTTCTGCTCTGATGACTTCCATGACTAGACTGATCAGGCCAGTGGCAGGTGTGCAAATCACAACTTGGCCTCCCAAACTAAGGTACAAAGTTGTGAGTCACACGTCTGCCACTGGACTGATGCGAAGGCTCAGTTAAGCTCATGCACTTTGCCTGAATTAGCATGTCTGATATTTCTTTAAATAAACGTTGCCTTCCTTCCTTTTGCAAAATGAATTTCCCTTTCTTTGGGGGAAGTCATTTTTCACTGAGGCCTGACTTATCAAAGCTGATGGCAGAGTCGCCTGGAAGGCAACAGTAATGCTAAAGAAATGTACATAGCGGCCGCTTCCCATAGCCAGGAAAGCTCCAGCACAGCCGAGTCCTAGTCTAACAATTATTCTCCCCTTTCCTTTCCCTACCTTCCATGCTCTCCATTGGCTTCTTCCTCCTCCCCAGCTTTCACTGTCCCCACTCCATTTAAAATGATAATCTCATAGTAGGCAGAACTGGAAAGTAGAAAGACATTCAGATTCCAGATCTATGATTTATCAAAAGTAGAAAATGACCTTGAGAAAGATGGATAAATGATCTTAAAACTCAGTTTGCTCATCTGTGTAATGGGTGTGATAGCCAAAGTTGTTGCAAGTATTACATAGTCGAACACGTAAGTGACCTAGCCACATTCAAAAAGATTGCACATCTCCTCAAGTGTCTCACTTCTCCTAGATAGCTTATGGCGCCTCCTGCAAATTTCCCAACAGAAATGGGAGCAGAAAGTGGGAAATCTCAGTTAAGACTTGGAGCAACCCAGGATAATATGAAACTTTGTTTTCTAATTTATGGAAGAGAAGGGAAGTTGGCCAGTTACACAGATGGACACACACACTCGAGTGTGTAGTGGTTGCCATCCCATTACTGGGTATATACCCAAAGGATTATAAATCATGCTGCTATAAAGACACATGCACACGTATGTTTATTGCCACACTATTCACAATAGCAAAGACTTGGAACCAACCCAAATGTCCATCAATGATAGACTGGATTAAGCAAATGTGGTACATATACACCATGGAATACTATGCAGCCAAAAAAAGGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAAAAAACCAAACACTGCATGTTCTCACTCATAGATGGGAACTGAACAATGAGAACACATGGACACATGAAGGGGAACACCGGGGCCTGTCATGGGGTGGGGGGAGGGATAGCATTAGGAGATATACCTAATGTAAATGATGAGTTAATGGGTGCAGCACACCAACATGGCACATGTATACATATGTAACAAATCTGCACGTTGTGCACATGTACCCTAGAACTTAAAGTATAATTTTAAAAAACAGATGAGAAAAAAGAAGAAAAAAAAAGTGTGCCGTGGTTGAGTGGAAAATGACTCCCCCCAAAGATAAGGAAATTCATTTAAAAAAGGAAAGGCAGCAACATTTAAAGAAACATAAGACATGCTAATTTACTCAAAGTGCATTAGCTTATCTAAGTCTTAGCATTTCTTATTTTATGAGTTAAAAGTTGTGAATTGCACCAATGCTGCTGGACTGTTCAGTCTGTTAGTGGAAGTTGTCAAAGCAGAAGCCTAGAAGTCAAATAAAAATGGCAAAACTTATGACTCACTGAAGTTTTTAGTGGTAGTCATTTTTATTTGATACATGCTGCTTAAAAATTAGTTCAGTATAGAAGAGTCATAAAAATGTATATTACCTACCATTAAGGAGGCAAAATTTGTGTATAATAATCAGTTATTACATTTTCAGAGGCAGGTAAATCACTAGCAGCAACATTTTTCTAAACAGAGGTACAGATGTGACCAGATATGCTCTGTTAGGAGAGGAAGGTATTCAGCATTAGTGTAGTATTTGGAAGCTCATTTGCATGTCCCAATTTATCCTGGTCCAAGAACAAAGAATGAAACAAACTAAGAGTTCATTCATTCCTTCATTCAGAAAATATTGAACTTTAATTTGGGGGGGTGCCTCTTATATTCCAAGCACTGTCCTGAGCACTGGGACTATGATGATGAATAAAACAAAAAGTCCTTGTCCTCATGAAGAGTACATTCTTATGGGATGACAAAAATAGTGAAATACATATATAATATCAGCAGTGAGACATGATGTGAACAAAAAATAAGGCAAGGTAAGAGGAACTAATGAGTGTTGCCAGGTAGAAGGTATCACCACTGAACTGCTCCACTATGGCTATCAGACTAAAAGAGTCTACCATTTATAAGACAGCTTACAGGAACCCCTAATTCCAGTTTTACTTCTTTCCTGACTCTTGAGATCTTTTTTTTCCAGTTAGTCTTATCTTTTAACTGTGTTAATGCTAAATAGCTGATATTAATAGGTTAAAAAAAAAAAAAGTCTGGTCGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCATGGCGGGTAGATTGCGTGAGCTCAGGAGTTCAAGACCTGCCTAGGCAACATGGTGAGACTCCATCTCTACAAAAAATACAAAAACAAATAGCCGGGTGTGATGGTGCACACCTGTGGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCTCAGGGGCAGAGGTTGCAGTGAGCTGAGATCACACCACTGTGCTCCAGCCTGAGTGACAGAGTGAGACCCTGTCTCAAAACAAACGAACAAAACAAAACACTCCAGGAACAGCTCTCATTCTAAATTATTGACTAAATATTCCCCAGCTCAGCTCATGCATGTTTCTGACCTAGTAATGATGCACACCAGGAATTATGATCAATAATGCCAACATGTCAATGTGATGGTTTTCATTTAAAAAGTCATTTCAGATGCAGAACTTCTGCTGATTATCTTATATAAGCAAAGAGTAACGTTAATTCTACCAGATTTTTTCCCCTGGATAAGTGACAAACTAATAACGTCAAATTAAACTAGAATTTAGGCATCAAGAACACTCTTGGCTGGGCACAGTGGATCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGAAGACTGCTTGAGCCCAGGAGTTCAAAACTAGCCTTGTCAACACAGCAAGTCCCCATCGCTACAAAAATAATAAATTAGCCAACTATGGTGGTGCATGGCTATAGTCCTATCTACTTAGGAGGCTGAGGCAGGAGAATTGCTTGAGCCCCGGAGTTCCAGGCTGCAGTAAGCTATGATCACACTACTATATACCAGTGTGAGCAACAGAACAAGACCTTGTCTTTATTTTAATTTTTTTTTTTTTTTTTTTAAAGAACATCCCTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTAGGGAGGCTGAGGCAGGCGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACGGTGAAACCCCAGCGCTAATAAAAATACAAAAAAAATTAGCCGGGTATGGTGTTGGGCACTTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCTGGGAGGCGGAGCTTGCAATGAGCTGAGATTGCGCTACTGCACTCCAGCCAGGGCGACAGAGCGAGACTCAGTCTCAAAAAAAAAAAAAAAAAAAGAACATCCCTTCACCTCTCCTTCTTACCTCTTAAAAATGGGCACTAAACTGTTCTCCTCAATGTTATTCACCTTGAAATCCAGTAACTAGATAAACAAATCCTTTTCTTGTTCTCTCCTTGTCCTTACTTACACAGCCAGGGTGTTCGGCTCAATATCTGCAGTCTCTTCCAGTTCTTAATTTCTGTGAATTCCAAGTTAGACCCTCCTTCCTTCAGACAAAAATGCACCCCGCCATTATAGACAGCCAGCAGCCTGCCATTTTAAGTCTTTGTGGACTGTATACATAGACTAAGCTTTGGGCTCTTTAATTCTAG
Seq C2 exon
ATGAATGGCTATCAAAGAAGGATCAAAAATGCAACTGAGAAAATGATGGCTCTTGTTGCTGAGCTGTCCATGAAACAAGCCCTAACCATTGAACTCCAAAAGGAAGTCAGGGAGAAAGAAGACTTCATCTTCACTTGCAATTCCAGGATAGAAAAAGGTCTGCCACTCAATAAGGAAATTGAGAAAGAATGGTTGAAAGTCCTTCGAGATGAAGAAATGCACGCCTTGGCCATCGCTGAAAAGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205:ENST00000285871:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development