HsaINT0029145 @ hg19
Intron Retention
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:29296]
Coordinates
chr7:76888312-76889553:+
Coord C1 exon
chr7:76888312-76888385
Coord A exon
chr7:76888386-76889325
Coord C2 exon
chr7:76889326-76889553
Length
940 bp
Sequences
Splice sites
5' ss Seq
AGTGTATGA
5' ss Score
0.67
3' ss Seq
TGTGTGTGTATCCCCTACAGAGA
3' ss Score
9.25
Exon sequences
Seq C1 exon
GATGAAGTGGCCCACCATCAAACCATTCCAGTACAAATTGGAAAAGAGATAGAAAAAATAACACGCAAAAAAGT
Seq A exon
GTATGATTTAATATTTTTACTTTGAATCCCTGCCAGTCCAAGTTATGTGTGCACACTAGAACAAGAGTACTAACCATTGGACACATTAAATTACTATGATAATTTTAGAAATTTCTGCTTTGGGCCCTGTCTAGGTTGTTTATATCAAGTTCTTTAAAAGAAAGTAATGCACCAAATTTCTATCATTCATAGTATTTATGGCTTAATTATGGGTCAAGATTCTGTTGCCAATTTATAAATCATATTTTTATGGAGAAGTTCAATTGACTTTAACAGAGCGGTGCATGGGATAAATTATGCGAACTGGTTAGAATTTCATAGTCTAGAAGTATATCAGCCAGGCAGCAGCCCAAAGCCCAAATAATAGTAACTCCCCACTTTGCCACCCATTCATGTGTATAACACTCCTCAGATATTCAGAGTAGATTGGGAGGCAGAGGTCATTGAGGAAATTCTCAGTGTTTAAGGAACCAAAAAAGATAAAGATTTTAAGTGAAGATACAAAAATTCTGGAAAAATAATATAATTACTCTGGTGACTAATCTTAAGGGGAAAAATTAGGCAGGCACTAGTAACTGTTCTAAAAACTAAGCTCACCAACATCAAAGTTGAGAAACTCAGGTCAGTTTCAGGAGGCTGGTCAGGACGAGGGTTGAATCACAGGAGATGGTAGCAAATTGGGATCTGCACAGAAAGTAGGGAGGCTGGGCAAATTCCTGCCTTCCGTGGCACTCAGTGGAGATACCCTCCAAGTCCCACCCATCTGTGGTCTTTACCCACTGCTGAGATCATTGAATTTATGACTATCTCTTCTGCTGCATGGTTAGAAAGCAAGAATAGGTAAAGCCAGCATGGCCTCAAAATAAGGCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCCCCTACAG
Seq C2 exon
AGAAATGGAAAAGAAAAAAATTGTCTTGGAACAAGAAGTCAAAACGCTAAATGACTCCCTAAAGAAAGTTGAAAACAAGGTTAGTGCTATAGTGGATGAGAAGGAAAATGTAATAAAGGAAGTTGAAGGCAAACGAGCCTTACTTGAAATCAAAGAACGAGAACATAACCAATTGGTCAAGCTATTGGAATTAGCCAGAGAGAATGAAGCAACTTCATTAACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205-CCDC146:NM_020879:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACCATCAAACCATTCCA
R:
AGTTGCTTCATTCTCTCTGGCT
Band lengths:
279-1219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)