HsaINT0030815 @ hg19
Intron Retention
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]
Coordinates
chr12:7593750-7596749:-
Coord C1 exon
chr12:7596693-7596749
Coord A exon
chr12:7593843-7596692
Coord C2 exon
chr12:7593750-7593842
Length
2850 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GCTATATTTTGTTTCTCCAGATT
3' ss Score
8.25
Exon sequences
Seq C1 exon
AGGACTCAGGAAGAGATAGACCCATAATGATGCTGCCTCAAAACTCGTGGCATATTG
Seq A exon
GTAAGGTTTTGCTTTTATTTTGCTCTGCCATTTGGGAGATGGTGGGTATACTAAGAATATGTGTAACAACAAACAGATATAAATATTATGTAGTAAGGTAAAAAGAAAACAGGACATGAGAAATATAAAAAAATTGAAAGTTTTGTGGAACTTAGAGTAGCAGCAATATTGGAGGCAAAACTGAAATCCAAGAAAGGAGGAAAACATTAATAAAGTAAACAGAAAATGTATTATAAAGACTGGAGATTAGAAGTCACACAAGGATATGAAGTTGTGGAAATAGAAAGAAGGGATAAATTAGAAACTTATTGTTATCAAGTGCCAGGTACTACAGTAAATGCTTTAGGTCATCTCAATTTAATTCACACATGTAACCTATTTTATAGATATTATTGTCTCCATTGGTAGATGGAAAATGAAGACTTATAAGGACTAACTGACTTATGTAAGGTCATGTAGTAGAATCTCAAGTGTAATTTAAATTCAGGACCAGCTAAGTCTGAGCCCTTGATCTTTCTGCTATAAATTTTAATAAAGCAAATAAATAAGAAGACATTATGATAAAAAACAAAGAACAAGTCTTTGATGGACCCTAAAGAGTAAGGACTAAGAAAGGAATACATGGCTAAGAAGTCTTTCACAGCACATCTGAAATTAGTAGTAACCTTTGCACTTGCACTTCATAGACATTTCGTGGAAATAAAGAATCACGAAGGGAGGTTTTTGCTGTATTTGGGACTTATAACTCCTAAATAGGATTGAGGCTTTTGAAAATGCAGTGCTACTCCTGTTGGCATTGTGTCTCTGTGCCATTCCTCAGTGCAATTACTACAAGTCAACTTAATATTTTGTAACTGTTTTGCTTATGACTAAAGACCAGCACATTTCTAGAAAACCAGCAGAAGTTCTGATATTTTTCAAAGCCTCCTTTTTGAAAAAGGGTTTCTACAGTTTGAGAAGCTTGGCTGCCTTCTATCTAGCAAGGCTCATCTTAATGAATTACAGTTCTTCATAATTCATGTGTGTTACTTAAAAGATAATATTATTTAACTTTCAACATGCTGTCTGCCATGTATCTAATTAGAAAAGGAATGGGAAAGATGAAGGTCTTGAATTGGTGAGATGGTATTAGATATATAGAAGGTCACAAGTTCTGGCAATTATACTTTAATTCTCCTTCTCAAGAATTTCCTACTGCACTATTTGTTCACGTTCATCAGATCTTGATTGTGCTGGTGTCAGAGCTTACTATTCTTTTTTCTTTATAGTTCATCTTTAGCTCTAACCATTCTTACAAATGGGCACTCAGAGTTTCCTGGAAGGATTTAGGAAGATGAAATGGCCTCCTAGGATAATCCTACACATGAGGTTTGATGGAACTAAATATTCTTATTAGGAACAAAAGAAATAAGAGAAAAAAGAAGACCAACTTAAAGTGTTTTGGACAAGATGGAAAAGAAGGAAATTGGGACACTAATTGCCCATTCCACACTTATTTCTCCCTGTTTCGTTCTATAGGGAGGGTTTTCTCTTGATTTGGGTACATTTTCCAAGAATGATGGATGTGACTGATGATAATTGTAATAATAAAGTCTCCTCTATGGTTATTACTGACTGTTGCCAAACTCACTTGGGATTACTTCTTAGAGAAGTGCCCGGGATCCATTTTAGTTTCAAAGCATCATTTGAAAAACTAAAGATGTCCACCAAAGCAGGTTGCGCCTTCTGTCTCTGCTTTTGCGTAGCCCAAGCAGCATGGGCCTTTCCCCGATGGGTACTGTTCCTTCTGTCCTCTTAGGGTTTTTGTTTTTTGTTGTCTGGGATTACACATGCTCAGTTTAACTCTGACTTCATCTTTTCCATAAGATACTAATGAAAATACTATTTAAGATAGTTCTCTAACAGTTACAGCTGTTACATACCCCTCAAGTAAACAGGATGATAAATATTATTTTAAAGTATTTCTTATACATTTATTTACCCCTATGAATTAATCATCCCATCTGCTTTTAAAATAATCTTTCTATAATGTAAATTTTATTTATTACACTGATTCAATTCTTTATAGTCTCCAAATAACTCTCAGAATAAATTCTCAACTCCTTCGCTTGTGTATTGCTCCTGCCTATCTTAGTTCATTCTTTCCCCACACGTGTAGCATAAACTTTATTAGATGCAGAACTGAGCATGACTGAAAAGACAGGGAGAAGTGAGGAAGTGGCAAGATTCTGTAGGAATAATAGAATAGTGACCCTGAAGAAAAGTGGATAGCTTTGGTAAATAATCATGAGCTCAATCAGCAGTTATTATAGTGACCTCCAAATGTTGATTTGCTTGTACATTCCAGTCACAAGCCACTGAGTGGAATACAGGCAAGAACACTTATTCATTCCTCTATTCCCATAATGAAGCACAAGATCGGGTACATATGTCATACTCAATAAAGGAGCAAATGAATGAACAAAGTAGGGGGATAACGTTAGGAGGAAAAACAGTAAAAATGAGGAGAGGGTCAAAGAGTTGAGAAGTAAAAATTACTCAGTAACCCAAAATGCTAATCAATTACCCCAAACAGCCACAAAATATATTTGGACACAGAATGCAATTTTTCAATGAATCACATGCTAAAATATCTGCCCTGTTACAAACCACTTGGTGCCTTTCCATCACAAACAGGAGCTAGTCCTGTGGCTTTTCCTGGGAAAAGGACTTTCTTGTGCGGTATCCTTGACAGGTGGAAGAATAATTCATCTTACTCCTTCTATTTTATTTTGGATTTAAGTCATTGAGGTCATCTAACATTTCTTAGAAAGACATGAAATTCTACCCTGCTATATTTTGTTTCTCCAG
Seq C2 exon
ATTTTGGAAGATGCTGCTGTCATCAGAACCTTTTCTCTGCTGTGGTAACTTGCATCCTGCTCCTGAATTCCTGCTTTCTCATCAGCAGTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-CD163L1:NM_174941:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)