HsaINT0030829 @ hg19
Intron Retention
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule-like 1 [Source:HGNC Symbol;Acc:30375]
Coordinates
chr12:7556131-7559448:-
Coord C1 exon
chr12:7559128-7559448
Coord A exon
chr12:7556452-7559127
Coord C2 exon
chr12:7556131-7556451
Length
2676 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCTCTGTGACTTCATCCTAGATG
3' ss Score
7.02
Exon sequences
Seq C1 exon
ATAGTAGTGATCTTGAACTAAGGCTTGTAGGTGGAACTAACCGCTGTATGGGGAGAGTAGAGCTGAAAATCCAAGGAAGGTGGGGGACCGTATGCCACCATAAGTGGAACAATGCTGCAGCTGATGTCGTATGCAAGCAGTTGGGATGTGGAACCGCACTTCACTTCGCTGGCTTGCCTCATTTGCAGTCAGGGTCTGATGTTGTATGGCTTGATGGTGTCTCCTGCTCCGGTAATGAATCTTTTCTTTGGGACTGCAGACATTCCGGAACCGTCAATTTTGACTGTCTTCATCAAAACGATGTGTCTGTGATCTGCTCAG
Seq A exon
GTAAGACTTACATCCACATGATTACATCAGATAAAATTTCTTTTTTGGAGAACTAGGACCAAACCCTGAAAAAGTTACAACCAATTGTGATGTGTAAGAATTGTGAAGAAGTTACAACCAATTGTGATGTGTAAGAATTGACACTTTCAATGTTTCCTTAGGGAACATGTCTGCATTTTATGCAGCATATTACATTGTAAGCCTCATGGGAATAAGGTTTTTACCCACCCCCAACACACCATTTTACTTAATTCTAATTGGTGCAACAAAATGTCCAATCTAGTCAAAATTGCTGTTAATCTATACAAGTGCATGGCTTATATTAATATTCAGTATAATTTTAAAATGTGTAATCACTTTGCATATTCATAGACACAACTATATTTTTCTAGGTTATAACTGAGTTTGTTTTAGCACTTCCTTTCATTAAAATAAACTATTTCCAAAGAGTACCTATCTAAAAATTTATGACTTTGCTAATTACTTTGTACCTTATACTAGTAAAATTTTTGTCTGCAGCCATTTGTTTTCTAGTTTGCAACTTTCAACTACAAGCAAGTTACCCCTCGCTGTTTATTTATAGTTTTGTATATCAGGGATTAAAATATCCTTCATATTTCTCTCACAGTAGTATTTTATGTTCAAAGATGTAATGAAACCTGTTCACTCTCTTAATAAGATTAAACCCACACCTTCTAATATTCTTACGAAAGGAGAATCCCTAGATGTAGAGCCAACGATTTTCCTCTGAGAGTCAGTTTGTCTTGATGGAAGAGGCTTCTTTCGTAAATTATTACTGACCTTACGTTACCAGCCTTACACAGGATGCCTTAATCTTATTTCCTATAGAATTTGAGATCAGGTCACATCTTTTAAGAAGAGTTTTTCTTAAGTCTAGAGTATGCCGCAGGGAACGATATACATAGAAAAACATATGTAGACGAAGAGGTTTATGGGTTTAGCTGTACCTTAGCCACGGGATTTATGCCATCCTTATAGGACTTTTGGGAAAGATAATATATTCAGAACATCTTTTAATCCTTTTCTTTCTGTTTATACTAGTTTGCTTGCAAGTTTTATCTGGGGACCAACCACTTTCACCATTCAAAAGAGTTTCCCATAGTATATTTAATCAATCCATCATTTTATAAGAAAAATTTTTCTCCACATAACAGAAAAGAGAGGTAGACGAAAGTTAGGAGAGAAAAGAGGGAGACATGAGAAGATGAGAGAGATGAGAGAAGGGGGAAGGAAACAGAGAGAATCTTAATCATTTTGATAAATTTTCTTACAATGAAGTGAATTCATAACTGTGTACTTCTGACTTGATATAACATCCTTAACTGTCAGACCAGTTGCTATTCAAACTCTGGAACTTCTGGAACTATTTGCCTCTGGAAGAGTAAGGAAGGGCCATGAAGAATGATGCAGATGTGAAAATAAGGTTGGAAAACCGTCCCAACAGTGAAAACAGATGTGTATGGCCAACCCACAGGAAAATGGGTAGTTAGATACATTGGCCTTCTCTTCAGCCCTGTAGTCAGAGGATTTTTTTTTCCCAAACAAAAACAGTTCACAGTTTCACAGTTTAAAATCTGTCACTTGATAATTATGTGACCCTGTATAAATCAATCTCCAAGTTGCAGATTTCTTATATCATGACTAGGATAACAGCATTAAATAAAATAGTGCAGGGAAAATACCTAAAATGTGCCTGGCAACCAGGAAGTTCTCAACAGGTATAGGTTGAGAACTATCATTATGACCTACATTATTTATAGGAAAATAAACCTCCAAATCTCCGAAGACTAACCTATTCAATGTGAACCAGATTTCTCACTAGATAGCAAATTATATTTTTGTAATGATGTATGAAAAGCTTGAATAATGGGAGGAGATGAGACATAGAAATTATATCTCCTTTCCTCAATTATTTCAAGAAAAGTTCTCCACATTTTTACTTTCTTGGGGTTATTTAATATATTTATTTGTATGCATGAAAAAGCAGAGTCACAGGAACACAAAGAAGTAACGTGATGTATATGCTGATGGAGCAAAAACACACAGTTTCTTCAAAAATTACCACTGAACAAATTTCATTTCCTATGACAAATATGTTTAATAAGCAAAGGCTTGCTTCTTCGTAGAAAACAGTATGAGAAAGAACATATTTCTATTTAAATCCAAGAGAGACTTTTTGCTAATTGTGCATTCCTTTTGTCCCTTTTCTTTCTGAAGTTACTGAAATGCAAGTATTTCCCAACACTATTTTATTTTACGGTGTTAAAAATAACCACTCTAATATTTTGAAAATTAATGTAATTAATGATATATAGGTTTATATGGCTTTTTATTGCAATGTTTAGTTTCTTAAATTTTAGTAAGGCTAAAGCAAGGTTCTTAGGATTATAATTTCAATTTTCATATTTAAAAGAAGATTGTTTTCATAAAGACTGACAAGTCGTTATGAAACAATCTTTAAAATTTCAATCTTTAAAATCTTTAAAATTTCAATCTTTAAAATTTTAAAACAAAATGATTTCCAGTCTTTAGTCTTTACTTTTCTCAGTATGTGAAGGATACATCTAATCTTCACATTGGAGGGGTTGGAGGAGAGGGATGCTGATGATATTGTCCCAAACCCAATTCAGACGTTTCTCTGTGACTTCATCCTAG
Seq C2 exon
ATGGAGCAGATTTGGAACTGCGACTAGCAGATGGAAGTAACAATTGTTCAGGGAGAGTAGAGGTGAGAATTCATGAACAGTGGTGGACAATATGTGACCAGAACTGGAAGAATGAACAAGCCCTTGTGGTTTGTAAGCAGCTAGGATGTCCGTTCAGCGTCTTTGGCAGTCGTCGTGCTAAACCTAGTAATGAAGCTAGAGACATTTGGATAAACAGCATATCTTGCACTGGGAATGAGTCAGCTCTCTGGGACTGCACATATGATGGAAAAGCAAAGCGAACATGCTTCCGAAGATCAGATGCTGGAGTAATTTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-CD163L1:NM_174941:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
NA
C2:
PF0053013=SRCR=WD(100=90.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)