HsaINT0031164 @ hg38
Intron Retention
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207759639-207761446:+
Coord C1 exon
chr1:207759639-207759724
Coord A exon
chr1:207759725-207761248
Coord C2 exon
chr1:207761249-207761446
Length
1524 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TCTTTTTCTTCATTTTTAAGAGG
3' ss Score
7.79
Exon sequences
Seq C1 exon
TTATTACTTAATTGGTGAAGAAATTCTATATTGTGAACTTAAAGGATCAGTAGCAATTTGGAGCGGTAAGCCCCCAATATGTGAAA
Seq A exon
GTAAGTAAATTCTTTTTTTTTAAATTTAGACCAGTAGTCCTCAAAGATTTTTGCCTCCTTTACACCCTTTACACTTTAAGATTAACAAAGATCCCAAAGAGGTTTCTTTTATGTGGGTTATATCTATTGGTATTTATCATATTGGAATTCAAACGGAGAGGTTTTTAAATAATTATTGATTCTTTTTGGTTTTGTTTGTTTTTCCTAAGACACGGTCTCAGGCTATTTCCCAGGCTGGGGTGCAGTGGCACAATCTCAGCTCATTGCAGCCTCAGCCTCTCCAGTAGCTGGGGCTTCAGGCATGTGCCACTATGCCTGGCTTTTTGTAATTTTTGAAGAGACGGGGTTTTGCCATGATGCCCAGGCTGGTCTTGAAATCCCATGCTCAAGCAGTCTGCCCCCGTGGGCCTCCCAAAGTGCTGGGATTACAAATGTGAGCCACCCCACCTGGCCTGATTAATTTGTAAGAATAAATGCAATACAAATTAACATATGTAACATAATTTTTATGAAAAATAATAATTTTCCAAATCAAAATAAAATTAGTGAGAATAGTGGCATTGTTCACATTTTTTGCATATCTCTTCAACATCTGGCTTAAAGCAAGATTGTATTTGGCCTGTTGTGTTATCACACAATATGTAGCCTTTGGAAAAATATCACTATATTCTTATTAGGATCAGAGTGAAAAAAGACAATAATATTTTGGTGGTATTGTGAATCACCAATTTAGAAAATGGATATATTTATAAATTGCAAAGGATTTCTTAACTAGCACCGAGTTAAGCATATTTTCTCATTAATTGTCAGCATTTCTTGTGATGACTAGAACAGAACTTAGCATGGCCTTCCAAATAAATACAGGCGTATTAGGCCGTTTTCGTATTGCTCTAAAGAAATACCTGAGACTGGGTAATTTATAAAGAAAAGAAGTTTAATTGGCTCATGTTTCTACAAGCTGTACAGGAAGCATGGTGCTGGCATCTGCTGGGGGTTTGGGTAGGCCTCGGGAAACTTAACAACCATTGGGAAAGACAGAAGGAGAGCAAGGTGTCTCACATGGCAGGAGCAGGAGGAGCAAGGTGGGGAGGACGGGAGGTGTTGCGCACTTTTAAATAACCAGATCTCCCAAGCACTCAGTATCACGAGAACAGCACCAAGGGGACGGTGCTAAACCATTCATGAGAAATCCACCCCCATGATTCAGACCCCTCCCACCAGGCCCCACCTCCAACATTGTGGACTACAATTTGACATGCGATTTGGTGGGGACACAGATCCAAACCATATCAATAGGTATTTACACTTTAAGAAAATGAGATTTGTTCTGAAAGTTAGTTACTACATTAATGGTTTGAATTTGGGATGATATATTTGCTCATAGAAACCTTCTTTTAAATCCATATTGAATTCACAAACAGCTTGTAGAAACCCTATATTGACAAATTTATTGAAGACACAGAAATTTTACTAATGCTGTCTTAATCTTTTACATTTCCTTTCCTCTTTTTCTTCATTTTTAAG
Seq C2 exon
AGGTTTTGTGTACACCACCTCCAAAAATAAAAAATGGAAAACACACCTTTAGTGAAGTAGAAGTATTTGAGTATCTTGATGCAGTAACTTATAGTTGTGATCCTGCACCTGGACCAGATCCATTTTCACTTATTGGAGAGAGCACGATTTATTGTGGTGACAATTCAGTGTGGAGTCGTGCTGCTCCAGAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335:ENST00000358170:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(45.8=90.0)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGAACTTAAAGGATCAGTAGCA
R:
TTTACACTCTGGAGCAGCACG
Band lengths:
254-1778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development