HsaINT0031167 @ hg19

Intron Retention

Gene

ENSG00000117335 | CD46

Description

CD46 molecule, complement regulatory protein [Source:HGNC Symbol;Acc:6953]

Coordinates

chr1:207956637-207958451:+

Coord C1 exon

chr1:207956637-207956675

Coord A exon

chr1:207956676-207958415

Coord C2 exon

chr1:207958416-207958451

Length

1740 bp

Sequences

Splice sites

5' ss Seq

TGGGTTGGT

5' ss Score

0.35

3' ss Seq

GGAACTGTTTTCTTTCTCAGATG

3' ss Score

8.65

Exon sequences

Seq C1 exon

GATATCCTAAACCTGAGGAAGGAATACTTGACAGTTTGG

Seq A exon

GTTGGTATAGCTATCATGACAAATATAAGTGGTAGTATGTGTAGAAACGTGTAGGTAATTAGTTTTTATGAGGTGCCCAAACATAGGATCCTTGGTAGGGTAAGATAACTTTCTTAAATGCTGTGTTTGTATGTAGGTTAAAATATATAAAACACAATTTTCTTTCCACATTATATTGTTATTTTGTGATGGTAATCTGTCGATAAATTTTCTTTCTATTCATATCTTATATACATGAACCTTAAAGCAATCTAAGTTGGGTTTATTTTTTCTGTAACACGCTGATTTAACACACTTGATGTAGGCTTACGCAGTTTACACAATGCATGTTAAAAAAAAAGATGAAGTGCAGTTGTGATATAGGCCAATGAAAAATAAAGATTTCTTAATAAGTAAAAACAAAAATCTATTACCTTTCATTTCTTAGACTAGTTTGGTAATGGTTAATCATTTTATATAATGCACCTTAGGCTTGTTTTTTAGTATTTGCCTTACCTCCAAAATCTGTGGTCCAAGTAAATCTGTTGCCATCTTAAACTGTTAAACACTTGATAACTGTTTATGAGATGAGAAGAGCAGAGTTGAACATAGCACTTTATGCTTTGACTTATAGCAATTTAATAAAAGTAATGGCAGTTTAGAAGCAAAGGTACTAGGGACAGAAACAGTTCTAAAAATTAAGATTTTATAGGATTATTTTGTGTTCTCTAGATAGTCAAAAATGTATTCTCAAATTTCTCTGTATATTTTTTATCCATGTGCCCTGGTGTTTCATTTATTATGGGAATCCTATTGGTATTTAGGACTATGTCTTAATTTTGGGGCAGGGCAGAGTATGGAAGTAGAGAGGATGGGAAGGGGATTGATAAGATAAAGTATTGTTTGTGAAGACTTTGTAAATACCATCTGGGCAATAGAATAATAGAAATTTATTTATGACTCACTCTACAGATCACTTTTGGAGGAAAAAATACAAATTAAATGTCTACCAAAATAAGAAATGACAGAATGACTGTTGAACTAAACCAACTCTCATGGGATAATACTTTTCAAAAATCATTTTCCTTTACTATAGTGAATTCTAATTACTCTAATAACTTTACCGCTAAATAACCTGATGTGGTAGCTATAGAGAAAAACAGTGAAAAATGAGGTTCCCATTAAGAGTTTCACAAGTGGAACCCTTAACCTGGAAACTGGTTAGAAGGGTTCTATGATCAAAATGACCTGGATGCCCTAGCAGTCATGCTAAAACTATATAAAAAATTTTTTTTTCCTCTGTAGTCTTGTATTAGTCCATTCTCAATGCTGTTGTAAGGAACAGTCTGAGACCGGGTAATTTATAAAGGAAAGAGATTTAACTGACTCAGTTCTGCAGGGCTGAGGAGGCCCCAGGAAACTTATAATCATGGAGGAAGGGGAAGCAAACACATTCTTCTTCACATGATGGCAGGAAGGAGAAGTATGAGAACCAAGTGAAGGAGGAAGCCGCTTATAAAACCATCAGATCTCGTGAGAACTTACTATCATGAGAATAGCATGGGGGAAACTGCCTCCATGATTCAATTACCTCTCATGGGGTCCCTCCCACAACACGTGGGGATTATGGGAATTGCGATTCAAGATGAGATTTGGGTGGGGACACAGCCAAACCATATCAAGTGTTTAGATGATCTGATTGAAATAAATGCTATCTGGAGATCCATGTGTTCAACATCTTGGAACTGTTTTCTTTCTCAG

Seq C2 exon

ATGTTTGGGTCATTGCTGTGATTGTTATTGCCATAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000117335-CD46:NM_172361:7

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.007 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF0248011=Herpes_gE=FE(16.4=100),PF060117=TRP=PU(7.0=30.8),PF122163=m04gp34like=FE(20.7=100),PF128772=DUF3827=PU(15.6=76.9),PF054546=DAG1=PU(15.9=76.9),PF151761=LRR19-TM=PU(3.4=15.4),PF151021=TMEM154=PU(14.3=69.2),PF0200911=Rifin_STEVOR=PU(9.1=30.8),PF0265610=DUF202=PU(21.4=69.2),PF055686=ASFV_J13L=PU(7.0=30.8)

A:

NA

C2:

PF0248011=Herpes_gE=FE(15.1=100),PF060117=TRP=FE(19.3=100),PF122163=m04gp34like=FE(19.0=100),PF128772=DUF3827=FE(17.2=100),PF054546=DAG1=FE(17.5=100),PF151761=LRR19-TM=FE(19.0=100),PF151021=TMEM154=FE(17.5=100),PF145751=EphA2_TM=PU(18.2=83.3),PF0200911=Rifin_STEVOR=FE(25.0=100),PF0265610=DUF202=FE(26.2=100),PF055686=ASFV_J13L=FE(19.3=100),PF126692=P12=PU(23.3=83.3)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000313875