HsaINT0031229 @ hg38
Intron Retention
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:61017759-61018393:+
Coord C1 exon
chr11:61017759-61018013
Coord A exon
chr11:61018014-61018288
Coord C2 exon
chr11:61018289-61018393
Length
275 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTGGTTCTGGGGGTTTCCAGCAG
3' ss Score
4.72
Exon sequences
Seq C1 exon
GACTTGAAGAGTTGCATGCCTCCCACATCCCAACTGCCAACCCTGGACACTGCATTACAGACCCGCCATCCCTGGGCCCTCAGTATCACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCAGGGGAGGATTACTGCAATAGTCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCTGGAGCAGCCCCCAAACTTGGAGCTGGCCGGCACCCAGCCAGCCTTTTCAG
Seq A exon
GTAAGCTGTGCCTCCCCCAAACCCCCATCCCATAGCCAGCCTGGCTGGAGGAGGCATAAAGCTGGGAGCCCTGAGTCAGGCTGAGGTCAGGATTCTACCCAGTTCCGCAGCCATTCGCTGTGTGCCCTTGGACACATCTCCCATCTCTGGGCCTTCACTTTGTCATTTGCCAAGCTAGGGACTTGGCTCTCGTGAGTCACGTGGGCCCCCCAGCTCTGGCAACTTGAGAAGTGGCTGTGTGCTGGCAGAGGGTGACTGGTTCTGGGGGTTTCCAG
Seq C2 exon
CAGGGCCCCCGGCTGATGACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCAGTTTGGCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725:ENST00000313421:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTTGCATGCCTCCCAC
R:
AAGTTCTGGTACCACTCCCCG
Band lengths:
308-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development