HsaINT0031534 @ hg38
Intron Retention
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]
Coordinates
chr3:48159344-48164437:-
Coord C1 exon
chr3:48164307-48164437
Coord A exon
chr3:48159456-48164306
Coord C2 exon
chr3:48159344-48159455
Length
4851 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GCCTTCCTTCCCCTGACTAGGTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
GGTGCAGTGAACTTGCACATGGAAGAAGAGGTTGAAGACTTCTTATTGAAGAAGCCCATTGTACCTACTGATGGCAAGCGTGTCATTGTTGTGTTTCACTGCGAGTTTTCTTCTGAGAGAGGTCCCCGCAT
Seq A exon
GTGAGTGCTGCACGGAACTGGGTTCTGGGGCACAGGCTCCATGATGCTTTTGTGGGACATGGTGGTTTGTGGCTTGCACTTGGAGCATATTTTAGCATATCAAGCAACCTCTGGCACATAACAAGCCATTTTCATATGTAATTTTATCCTGAGGTGAACTTTGGCTCTTCCAGTCTCCCCGACTGTCCTTAGTCTGATCTGTGGGGCTACTGTTCTCATGTGACCTCCTTCAAGTACAAAGTGACCGTTCCTTATGCAAATGCCAGAAAAGTGTGAAGTTCTCATTCTGTAAAACCTCATATGATATGATGCTTTGAAACACTTGATATTATTACCAATTTCAGGGTGAAAAGAAAAAAGGGGGCCAAAGAGCTGCCCATCAGTCATCTGTGTCCATTCTAAAAGGATTGCAAGCCTGCTGTTTGTCAGGCACTGACAATAAAAATGTAACTACAGTAAAACACAGTACAGTAAAAATACCACAGCGAGCAGGACCAACAAGGACCCTACTGCAGCAGAGATCCAAGTGGGGATCCGTATAAATGCTAGGAGGACAGGCAGAGAGGTAGGACAGAGAGTGCAGCTTAACTAGGATGGTCCAAGGGAGACTTCTGCAGGACCACGTTCTTATGCCACCTTTTTATTTTGAACCAATTTATTTTAAAAAACATTTTTAAATTAAAAAATTTCAATTTTTTTTTTTTGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCTTCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCATCACGCCCGGCTAATTTTGTATTTTTAGTAGAGGCAGGGTTTCTACATGTTGGTCAGGCTGGTCTTGAACTCCCGACCTTAGGTGATCCGCCTGCCTCAGCCTCCCAAAGTAGTGGGATTACAGGCGTGAGCCACTGCACCTGGCTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTGAGGCGGAGGCACACTGTTTTCACCCAGACTGGAATGCAGTGGCATGATCTCGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATAACAGGCGTGCACCACCACACCCGGCTAATTTTTGTATTTGTAGTAGAGATGGGGGTTTCACCATGTTGGCCGGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCGCCTTGACCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCAGCAGAAATTTCAAATTTTGAGATGGGGTCTTAATATATTGGCCAGGTTGGTCTCAAACTCCTGGCCTCAAGCAATCCTCTCTCCTTGGCCTCCAAAGTGCTAGGATTGCAGGCATGAGCCACTGTGCCCACCCCTTTGAACCTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGACTTACTGCAAGCTCCGCCTCCTGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCACCATCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATTTTAGCCAGGATGGTCTCCATCTCCTGACCTTGCGATCTGCCCGTCTCGGCCTCCCAAAGTGCTTGGATTACAGGCGTGAGCCACTGCGCCTGACCTGAACCATTTTAAAGCTCAAGAAGAGGTGAGGTTATGGCTGGGCACAGTGGCACCTGTAATCCCAACACTTTGGGAGGCCGAGGCAGGAGGATCACTTGCTCGGGAGTTTCAGACCAGACCAACCTGGGTAACACAGTGGGACCACACCTCTACAAAAAATAGGAGGTGGGAGGATCGTTTGAGCCCAGCAGGTCGAGGCTGTGGTGAGCCATGATCATGCCACTGTACTCCAGCCTAGGTGACAGAGTGAGATTCTGTCTCTCTCTCACACACACACACACACACACACACACACACAAAGGTTATACTTGCACACACTTCACCTGATTTTATTAATTTTTAACATTTTGTCACATTTGTATGTACATGCTCTACACACAGGCAACTACAGTACAACTTGACACTTTTGACTGTCATCTCATAAGTCCTTCAAACATCTGTCTCCAAAGGATGCTCATTCATGAATGGAATTATTCACTCAGCAGTTTTTTTGTTTGTTTGTTTGAGATGTAGTCTTGCTCTGCCACCCAGACTGGAGTGCAGTGGTGCGATCTCGGATCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGGCTCCCAAGTAGCTGGGACTACGGGTGCATGCCACCATGCCAAGCTAATGTTTGTATTTTTAGTAGAGACGGGGTTTTGCTACATTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTACCCGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCCTGAAACAAACTAATCTGGACACACATACACACACATGTAAATTGTTTTTAAACCCACAAAAGATGCTGCTCTCTTTTTTTTTTATTTTTGAGTCAGGGTCAGTCTCTGTTGTCCAGGCTGGAGTACAGTGGCAGGAGCACAGCTCACTGTAGCCTCTGCCTCCCAGGCTCAAGTGATTCTCCCACCTCAGCCTCCCAGGAAGCTAGGACCACAAACATGCATCACCATGCCTGGCTAATTTTTGTATTTTTTATAGAGACAGGGTCTCACTGTGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAGGCAATCCTGGCCTCCCAAAGTGCTTGGATTACAGGTGTGAGCCGCCATGCCCAGCCCAAAAGATGCTATTCTCTTAATCTCTCATTTCCCCATCTTCCTCTTTAACACCTCTAATATAAAGGACATTATTATACCATATTGAAACTTCACCTAGATATACAGAAAACGCCCCATCTCTGTATTCTGTATTTGCAAGCTGCATGTTTATATCACCATCTACAGATACCCCTTACACTTCGTTCCCCACTTGAGTTTCGCCATCACTGGCTTTCTGTTGTTCCACTGGGGAAAGATTTGGGATTCACAGGTGAACTCTTTTTTTTTTTTTTTTTTTTTTTTGAGTTGGAATCTCGCCCTTTCGCCCAGGCTGGAATGCAGTGGCACAATCTCGGCTCACTGCAGCCTCCTCCTCCCGGGTTCAAGCATTTCTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACCTGCCACCACGCCCAGCTAATTTTTTGTAGTTTTAGTAGACACAGGGTTTCACTATCTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCACCGCCTCAGCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCACCGCGCCCAGCCAAACTCCTTTTAACCACAGGCAAATGGTTTAAGCTACGTGCTGCAGAGGAAGCTGCTGCCCATCCCTCATGAGCAGCTAACAAAGGCCCCAAACCACTGAGCTTCAAGAGAAAATCAGCAGATACTCTTGGCTCTTGTGTACCAGATACCTTTCTAGATACTGAGGGAGAAGAGCAGTGAACAAAACAGACCAAAAAATCTCTGCCTTCATGGAACTTACATTTCGGAGTGGACAGGAGATCGAGACCAGCCTGGCCAACATGGTGAAATCCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCGGACACCTGTAATCCCAGCTACTTTGGAGGCTGAGGCAGGAGCATCCCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCGCGCCAGTGCACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAGGTGACTGGGTGCGGTGGCTAACTCCTGTAATCCCAACACTTTGGGAGGCCAAGGCAGGTGGATCACAAGGTCAAGAGGTCGAGACCATCCTGGCCAACATGGTGAAGCCCCATCTCTACTAAACATACAAAAATCAGCTGGGCGGTGGCACGCGCCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGACGGAGATTGCAGTGAGCCTGAGGTCACGCCCTTGCACTCCAGCCTGGTGACAGAGTGAGATTCTGTCTCAGAAAAAAGAAGGTGCTTCAGAGGAAAATAAGGCCAGTGGTGGAGCTCCCAGGCAGGCTGGAGGAACAGTAGTGGGGCTGCAGGGGCTGGCGTGGGGTGAACAAGGGGCAGAGCAGCAGTAGGGGCCTGTAGAGCTGTAGGCCTCTGAAGGACTTGGGGCCTCGGGCTTTTTCACCAAGGGCGAGGCAGTAAGCAGCCATTGGCTGGATATTGAAGACCATTCAGTCCAAGTAGAGGATAGAAACAGGGCCCCGAGGCAGGAGCAAGTTCAGCCTCTTTAAAAGCCACAGAAAGAAACAAGCCCACTTATGTAGAAGGAGGTGAGTGAGGGAGCCTGGCTGAAGAGAAGGCTGGGGTGGAGAAAGCAAGGGGAAGCTGGCTCATATAGTGAAAACTTGCCACAAACTGTGGTGGTGAAGGTGCTGGGCAGGACTCAGATGCTAGGATTGTTGGAGAAAGGAAAATTGGGGAAGAGACCATCTACTGGCACTGGCTGTGAGTGCTGCTCATGTGGCCAGGAACTTGCAACTCAGCACTGATTGTTTCTAAGAATAAATGTCAAGTTGGGAAGATGTGTATAAGGGGGACTTAGACCACAACTGCTGCTTTGACTGCGTTGCCTTGTTGCTGTGCTGGAAAAGCTAACCCTGCTTTGGCCTTCCTTCCCCTGACTAG
Seq C2 exon
GTGCCGGTATGTGAGAGAGAGAGATCGCCTGGGTAATGAATACCCCAAACTCCACTACCCTGAGCTGTATGTCCTGAAGGGGGGATACAAGGAGTTCTTTATGAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045:ENST00000302506:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=FE(39.8=100)
A:
NA
C2:
PF0058115=Rhodanese=PD(32.4=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development