HsaINT0031707 @ hg19
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:29829]
Coordinates
chr11:64609285-64612041:-
Coord C1 exon
chr11:64611882-64612041
Coord A exon
chr11:64609377-64611881
Coord C2 exon
chr11:64609285-64609376
Length
2505 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCGCCCTGTGTCCCCTCAGCCA
3' ss Score
9.47
Exon sequences
Seq C1 exon
ATGGAGCGGCGGCTGCGCGCGCTGGAGCAGCTGGCGCGGGGCGAGGCCGGCGGCTGCCCGGGGCTCGACGGCCTCCTAGATCTGCTGCTGGCGCTGCACCACGAGCTCAGCAGCGGCCCCCTACGGCGGGAGCGCAGCGTGGCGCAGTTCCTGAGCTGGG
Seq A exon
GTGAGTGGCGGGGCGGCACGGAGCGGGGGCGGGCCTAGGGATATCGCGCCGAGACCCCCGCACCCGCAGACTTTCCCGCAGGGACCCGCACCCCCACGGGCTTCCCTCGCAGACTCCCTGCAGTGGCCCTGACGCGTACCACCGGACCCCCGCGGCCCGCACACTCGCCTGCACACCTCACCCTCACTCCAATTCTCACACACGCTCTCTCCCTCTCACAGACCCCGACACATGCACACACATACCAACTTGTGCTCAGGTATCGACCGCAGACGCATGTACCCAGTGCACCGCCTAGAGTCCCTTACAGATTTCCTTGCTTACAGGCCACACCTGACGCAGGACACACACAGACCCTCATGCATGTCACCCACTGATACACGGGCTCTGTTTCTCCTTCCTCTCGGATGCATTGAGACACACAACTCATGGAGAGACCCAGGGAGCGCTGCAGACCACCCCGACCGCATTGGCACTGCAAAACACACAGATCTGTAGGTATCGCACACTTGCAGACCTTCCCCCCACCAACACACACACCCCCAGCTCCCTGGGTACAAGACCACTGCAGCCTGGACTCAGGAACCGATCTCCAACCCTTGGCCTGTGCAGGCTGCTGGCCAAGCTCCTTGGGGGCTGTGGCGCCGGGGCCGGGGAGGGGGGCCTAGCTGGAGATGGGTCTGTACCTTTCCTGGTAGACTCATCTGAGTCATTGGGAGTGGCTGGCCCGGGGTGACCCTGAACCCACTGTGGGCACTGGCGCCAGCTGGAGGGTTCCCTGGTCACACCCTGCCGGGCCATGGGGAAAAGGCACGGGGGCCTGGCCAGGGCGGGGTGAGGCAGGTGTTTGCCCAGTGGGCAACTAGCGTTCCTGGCACTCCTGAGCTCTGGGAAGGCACAAGGCCTGGGGTAGAGGGGGAGGCTGCCACCTAGATGTGCCAGGGAGTTGTCCCCTAGCCCCAACCCTTCCATCCAGGGCGAGGCAGTCAGAGGCCCCTGCCTCTGTGCCTGTCTCCCTGGTATGCCTCCGTGCTATGCCTGTCTGCCTGTGTTGTTGTCACCCCCCCCATGACACCCACACACGTGTGTGTGTTTGCACACACATGTGTGCTCCTCCCTGACTGCCTCCAGCACCTCTGCCTGGGACCCCGGCATGGGGGCCCTCTGTTGACAATCTCCCAAGGTAACTCAAAGGGCTGTGACTCATTCCTCTCCTGCTTGTCTCTACTTGTCCCTGCTCCTGCCCGGAGCCCCCATGCCCTGTGGGAGGCCAGAGGATTAGGCAGCCTGTCCAGGGGCCTGGATCCTCCTGCCTGTGGGCCTGGGCTTCGGCCCTCTTCTGGCGGGTGGGTCCCTATGGTGCTGGCTTCAACTCCCACGGGGAGGCCCGGGGCTGCTCCTCCCCAGCTCCACACACAGACCTGGGAAAGAGACAATGAATTTCTGTAATGAGGTTTCCACCCCGCCCCCGCTGCGGGCTTCTGCCTGATAAACCTGTGGAACAGCTCTCTGTCCCACCCACAGACCCGCCCAGCTGGCAGGGAGTTTACCTCCTGGCAGGGGGAAACTGAGGCAGGGCGCCAGACCACAGCTGCCCCCCATCCTGACTGATCACTCCTGCCTCCCTAAGACCCAATTCCTTCCCAAAACCTGGGGCTAATCCAGGCCTGGAAAGTGCCTGGGAGTGGCTGGAGTTGCCCTTCCTGGAGGTATCTGGGATGTGAGGAAAGAGGACGTTCTTGACCAGACAAAAGCTTCGTCCAGACAGGGAGGCAGGGCTGGGAGTGAGAGAGCCGGTCAGGCCTGGAGGCATCCTGAGCACTCACGCCTTCAGGGGCTAGTGCTAGCACCAGGGAAAGGCATCTTTGTCCTGTTTGTGAGTCTCAGCACCTTGGCAGACTGGCATCCATGCCTCCAGCCTGAGGGGCCCCACGTGGGAAGCATAGAGCCTGTCCTCCCTGCCCTAGGGGCTGCAGGCCTCACCCCCAACCAGGCACCTCTATGCCTACAGGGTCCCGGGACCCAGGCCCACAGCTCCTGAATGGGAGAGAAGCCTCTCTGGGGATAAGGAATGTCACCCGTCCAGTTTCCTAAGACAGGCCCTGGCCTGAACCTGTGAGGGGGCCAAGAACTGTGAGGTGGGGGTAGGAATGGTGTCCCCATGGTCCCCAGGGTGACCTGGCCAAGCAGAGTCAGGCCGCAGACTGGGCAGGACTACAAGTCCCATCAGCCCCTGGGATGGAGGCTGCCTAGAGTCTGGGGCCAGGGGTCCAGGGAGGTCCAGGGACCAGGCGGTCAGCTGAGCCCGGCCTCTGACCTTCCGCACTTCCTGATCATGGCCAAAGGAGCACCAGTTCCTGCCACAACCCCTTGGCCCGAGGCTGTCCCTGGGGAGGTCATCCCTGCCTGGGCTCACAGGAGCGGCAGCTCCTGGCTTGCCCAAGGTGAGAGGGGGAATGGAGCCCTCCCTCCCTGCACTCTGAGTCCCGCCCTGTGTCCCCTCAG
Seq C2 exon
CCAGCCCCTTCGTATCAAAGGTGAAAGAACTGCGTCTGCAGAGAGATGACTTTGAGATCTTGAAGGTGATCGGCCGAGGAGCCTTTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-CDC42BPG:NM_017525:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(4.9=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)