HsaINT0031721 @ hg38
Intron Retention
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr11:64833600-64833836:-
Coord C1 exon
chr11:64833738-64833836
Coord A exon
chr11:64833660-64833737
Coord C2 exon
chr11:64833600-64833659
Length
78 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
GCTCCCCCGCCCTCCTGCAGGCT
3' ss Score
9.31
Exon sequences
Seq C1 exon
AAGGATTCTGCCAAGGACCCTGGCATCTCAGGAGAGGCCACAAGGCATGGAGGAGAGCCAGATCTGAGGCCGGAGGGCCGACGCAGCCTGCGCATGGGG
Seq A exon
GTGAGGACAGGTGGGTCCATCGTAGGGGGCCTGGGCCCCGCCCTTGCCCGTCTCACCTGCTCCCCCGCCCTCCTGCAG
Seq C2 exon
GCTGTGTTCCCCAGAGCACCCACTGCCAACACAGCCTCTACAGAAGGTCTTCCTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219:ENST00000342711:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATTCTGCCAAGGACCCT
R:
CTTAGCAGGAAGACCTTCTGT
Band lengths:
159-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development