HsaINT0033961 @ hg19
Intron Retention
Gene
ENSG00000167123 | CERCAM
Description
cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:23723]
Coordinates
chr9:131190581-131191112:+
Coord C1 exon
chr9:131190581-131190700
Coord A exon
chr9:131190701-131191035
Coord C2 exon
chr9:131191036-131191112
Length
335 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
GGGTGTGCTTCCCTTTGCAGTGG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GGGTCTCCGTCCACGTGTGCAATGAGCACCGTTATGGGTACATGAATGTGCCGGTGAAATCCCACCAGGGGCTGGAAGACGAGAGGGTCAACTTCATCCACCTGATCTTAGAAGCACTAG
Seq A exon
GTGAGGGCTGGGGAACTGTTCCACCCACCTGCTGCCGGGGCTCCCTGCCTCCCCACGGTGCCCCTTTCCCTAGGCCCTGGACGGAGCGGGCATTGGCCTTGGGGTTCCAGCTTTGTCCCTAACTCGTTCCATGACTCTGAGAAAGTCCCTTTCCCTGTTGGGCCTTAGTCTAGCATCCCTACAATGGGGGCAGGTGGATCCTGTGATCTCTGAGGTCCCGTCCTGTGGGGTGTTCTGCCAAAGGGGGCAGGAATGAGGCTGGGGGCTAGGACTTCAGGGTGACTGCTAACAGGAGTCAGTAGGGACTCGTGCTTGGGGTGTGCTTCCCTTTGCAG
Seq C2 exon
TGGACGGCCCCCGCATGCAGGCCTCAGCTCATGTGACTCGGCCCTCTAAGAGGCCCAGCAAGATAGGGTTTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167123-CERCAM:NM_016174:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGTCCACGTGTGCAAT
R:
TCAAACCCTATCTTGCTGGGC
Band lengths:
190-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)