HsaINT0035245 @ hg38
Intron Retention
Gene
ENSG00000135902 | CHRND
Description
cholinergic receptor nicotinic delta subunit [Source:HGNC Symbol;Acc:HGNC:1965]
Coordinates
chr2:232528501-232528971:+
Coord C1 exon
chr2:232528501-232528656
Coord A exon
chr2:232528657-232528861
Coord C2 exon
chr2:232528862-232528971
Length
205 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CTGCCCATTGCCCTCCCCAGTTC
3' ss Score
6.98
Exon sequences
Seq C1 exon
CAATGACGGCTCCTTCCAGATCTCCTACTCCTGCAACGTGCTTGTCTACCACTACGGCTTCGTGTACTGGCTGCCACCTGCCATCTTCCGCTCCTCCTGCCCCATCTCTGTCACCTATTTCCCCTTCGACTGGCAGAACTGCTCCCTCAAGTTCAG
Seq A exon
GTGTGCCCTTTTCTCCAGCCACCCCTCACCCCAAAGCACCCTGCCAGAGGCCAAAGAAGGTGACTGAAGCACCCTCAGACAGAGGCCCCTGCCCTGTCTGGATTAGTGCTGCCCTCCCCACAATGGTCCTCCCTTACCAGCCCTTCCCCACTCTGTGGCCCCAGCCACTGGCCGAGTGTCACTCTCTGCCCATTGCCCTCCCCAG
Seq C2 exon
TTCCCTCAAGTATACGGCCAAAGAGATCACCCTGAGCCTGAAACAGGATGCCAAGGAGAACCGCACCTACCCCGTGGAGTGGATCATCATTGATCCTGAAGGCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135902:ENST00000258385:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(23.4=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGCTCCTTCCAGATCTC
R:
TGTGAAGCCTTCAGGATCAATGA
Band lengths:
262-467
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development