HsaINT0035249 @ hg38
Intron Retention
Gene
ENSG00000135902 | CHRND
Description
cholinergic receptor nicotinic delta subunit [Source:HGNC Symbol;Acc:HGNC:1965]
Coordinates
chr2:232531542-232534135:+
Coord C1 exon
chr2:232531542-232531656
Coord A exon
chr2:232531657-232533930
Coord C2 exon
chr2:232533931-232534135
Length
2274 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCCCTTGACATGGCCCCAGCTC
3' ss Score
3.25
Exon sequences
Seq C1 exon
GTTCCTGCTCTTCGGCATGGTGCTGGTCACCATGGTTGTGGTGATCTGTGTCATCGTGCTCAACATCCACTTCCGAACACCCAGCACCCATGTGCTGTCTGAGGGGGTCAAGAAG
Seq A exon
GTGAGTACTTGGCCCGGCGCAAAAGCTCACCACTGTAATCCTGGCATTTCAGGAGGCTGAGGCGGGAGAATCTCTTGAGCCCAGGAGTTGGAGACCAGCCTGGGCAACATAGAGACACCCCTGTCTCTATAAACAATCAAAAAAATTAGCCAAGTGTGGTGGCGCATGCTTGTATTCCCAGCTACTCAAGAGGCTGAGGTGGATCACTTGAGCCTGGGAGGTCAAAGCTGCAGTGAGCTGTGATCGCGCCAGGGCACTCCAGCCTGGGCAACAGAGTGAGACCTTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGAGCACTCTCAATAGCCAAAAGCTGGAGACTAAGCCAGGTACAGTGGCTCACACCTGGAGTCTCAGCTACTCGGGAGGCTGAGGTGGGAGGATCCCTGGAACCCAGGAGTTGGAGGTTGCAATGTACTATGATCACAGTTGCACCCCAGTCTGGGCAACAGATCGAGACCCCATCTCTAAAAAAATAAAATAAAATGAAAAGCAGGGACCGGGTGTGGTAGCTCACACCTATAATCCCAGCACTTTGGGTGGCTGAGGCGGGTGGATCACCTGAGGTCAAGAGTTCGAGACCACCCTGGCCAACATGGTGAAACTCCATCTCTACTAAAAATTCAAAAATTAGCCAGGCGTGATAGTGTGCGCTTGTAATCCCAGCTACTCGGGGGGCTGAGGTACGAGAATCGCTTGAACTCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCTCACCACTGCACTCCAGCCTGGGCGACAAGAGACAAGAGCGAAACTCTGTCTCCAAAAAAAAAAAAAAAAAAAAAAAATCTGGAACTTGTCCAAAGGCCATCTGTAGAATGGGTAAAGACACTGGACATATACTCCCACGGGAGTGCCGCTCAGCCGTGCAGAAGCACCTGCGGCTGCTGCAGCCCTGCACGTGTGAACCTCCTGGCACAGTGTTCCGTGAAAGAAACCAGACGCAGCAGCACATGCTGCAGGCCTCACTTTGTAAGAAGTTCAAGAACAGGCCAAATCAGTGTTTGGTGATGGAAGTCAGAATGGTGGCTATCTCTGGGGCTGGGAGGGTACTGAGTGGGGGCAGGTGTGAGGGAGATTTTTGGGGATCATGTTCACTATCTCATCACTGGTGATTTACCCAGTGGAATGCATCTGTAAAAATTCATCTAGCTATATACTTAAGATGTGCTCATTCCACTGTATGCTGCAACTCAGAAGGAAGAAGGGGAGGACTGAGTGCAGGGTGCTCAGGAGGGGGCTGCCCTTGCCTCTCGGCTGCTGCAGGGCCGGCTGGCTGTTCTGGGACAGCTGAAGGCAGTTTAGCAACTCTTTTTTTTCTTTTTTGAGATGGAGTCTCCCTCTGTCGCCCAGGCTGGAGTGCAGTGGTTCGATCTCAGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTTTCATGCCTCAGCCTCCTAAGTAGCTGGGATTACAGGCGCCCGCCACCATGCCTGGCTAATTTTTGTATTTTTAGTAGCGATGGGTTTCACCACGTTGGCCATGCTGGTCTCGAACTCCTGACCTCAAGCGATCCACCTGCCTCGGCTTCCCAAAGAGCTGGGACTATAGGCGTGAGCCACTGTGCCCGGCCTTAGCAACTCTTTTTGTCTTTCAGCATTTGATGGGGGAGACTCTAGCATTTGGAGCATTTACCTTAGTTTTTGGTCTTTAATTAATCATTTTTAGTGAATGGGTTCTGCTCCGCACCATGGGTGATGTGGGAGAGCTGGAAGCAACCTGCATGTGCATCAGTAGGAGATCGGGGAATCAATGACAGAGTCAGACGGGGGAGCACTTTGTGGCAGCCAGGAATGAAGTCACAGATGTTAGGATGTGTAAAGGTCACCCCATGCTTGTAAAATGGCCTTTTTGGCCAGACACGGTGCCTCGCCCGTAATCCCAGCACTTTGGGAGGCCAAGTCAGGCAGATCACGAGGTCAGGAGAGCAAGACCATCCTGGCCAAAATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGCGTGCCTGTAGTCCCAACTACTTGGGAGACTGAGGCAAGAAATCACTTGAACCCGAGAGGTGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGTGACAGAATGAGACTCCGTCTCAAAAACAAAGAACAAAAAACAACGCCTTTCTTGTGGCCCCTTGACATGGCCCCAG
Seq C2 exon
CTCTTCCTGGAGACCCTGCCGGAGCTCCTGCACATGTCCCGCCCAGCAGAGGATGGACCCAGCCCTGGGGCCCTGGTGCGGAGGAGCAGCTCCCTGGGATACATCTCCAAGGCCGAGGAGTACTTCCTGCTCAAGTCCCGCAGTGACCTCATGTTCGAGAAGCAGTCAGAGCGGCATGGGCTGGCCAGGCGCCTCACCACTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135902:ENST00000258385:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(16.0=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development