HsaINT0035294 @ hg19
Intron Retention
Gene
ENSG00000135702 | CHST5
Description
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 [Source:HGNC Symbol;Acc:1973]
Coordinates
chr16:75566987-75569068:-
Coord C1 exon
chr16:75569025-75569068
Coord A exon
chr16:75567082-75569024
Coord C2 exon
chr16:75566987-75567081
Length
1943 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
AATGTAAGTCTCCTTATCAGAAA
3' ss Score
2.82
Exon sequences
Seq C1 exon
CTCTGGCTGCTGCTCCAGCTCTGGCAGACACGCCAAGCTTTGAG
Seq A exon
GTACTTTGGTTCTTCATTCTCCACCGGAGGTGTCCCCACACTCGGTTGGGCTGGGGGCCGGGCCAGTGGCCCAGCTGTGACGCTCCTCTGTCCTGCACCAGAGACCTGGGTTGGCGGGAAGAGCTGGGGGTGGCTTTTCCATCAGCAACGTGGAAAGTTCATCTCCCCTGCTAGCGCTGGTTTGGAAGTGTCTTGCTGGGGCTTCGGCTGCACGCGGGAATCCTCACTGCGCAGGGCAGGGGTCGGGGTGCGGGTTCTTATTCCATACTTGGGTCTCAAAGGGTGTGGCTTTCAAAAGCTCTCCATGAAATTCTTGAGAAAAAATAGCTTGGTGAGTTAATTTGCAACCAGACTCAGGGGAAGTGGAGTCGTGCCTCACTGCCTCTAGGGCCTTGATGTTAGGCTTTAGGAAAGGCCCTCTGGGCCCCAGGACAGTACAGGTGCCTAGGAAATGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTCGAGACGGAGTCTCGCTCTGTCACCCAGGCTGAAGTGCAGTGGCCTGATCTTGGCTCACTGCAACCTGTCTCCTGGGCTCAGGTGATTTCCTGCCTCAGCCTCTGGAGTAGGTGGGATTACAGACGCCCGCCACCACACCCAGCTAATTTTTGTATTTTTACTAGAGACGGTGTTTCACCATGTTGGCCAGGCTGTCCAATTCCTGACCTCAGGTGATCCGCCCCGCTGAGGCTCCCAAAGTGCTGGGATCACAGGCGTGAGCCATGGCACTGGGCCCAAATTTTTGTTTTTGTTTTTGTTTTTTCAGATGGGGTCTCACTCTGTCACAGAGCCTGGAGTGCAATTGTGCCATCTCGGCTCACTGTAATCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGCATGAGCCACTCTGCCCAGCTAATTTTAGCGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTACCCATCTTGGCCTCCCAAAACACTGGGATTACAGGCATGAGTCACCGCACCTGGCCTAATTTTTTTTTTTTTTTTTTTTTTTTTGATATGGAGTTTTGCTCCTGTTGCCCAGGCTAGAGTGCAATGGCACAATCTCGGCCACTGTAACCTGTGTCTCCTGGGTTCAAGCTACTCTCCTGCCTCAGCCTCCAAGTAGCTGAGATTACAGGCACCTGCCACCAGACCTGGCCTAATTTTTGTATTTTTAGTAGAGATAGGTTTTGCCTTGTTGGCCAGGCTGGTCTTGAACTCCTGGCGTCTGGTGACCACCCACCTAGGCCTCCCAAAGTGCTGGGATTACGGGCGTAAGCCACTGTGTCCAATGTCTAGCAAATGCAAATGTTGACTTCCTTTCTCTCTCCTTTTACACAGAGGCAAGGCAGTCAAGAATTGCATTTTGGCCAGGCGCTATGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCAAGTCTGCGATGCCCTCATCTCTACTTTTTTAATTTCGTGTGACCTGTTTGTATTATTTTTCTAAAAATTAAACATGTAATAAATATGTGCCCCCAGAAAAGAATCAAAAAACGGAAGAATTTAGAGGGGAAGGGGACAGTCCTTCCAGGATGGAAGAGTTCACTGGACAAAGGCTTAGGAGTGTGACCCACCACAGGGCCCTGCACTGGGAGTCTGGCTCTTGGACTTAAGCCCCTGCCCTGCCTCTTTCTTACTGGGTATTAATGTCTCTGAGCCCCACTGCTTCAATTAAAACAGATAGGGATGGTTATTTCTACCTCCAAGGGACTTGGGAGGATAACATTCAATCATGAAGATGAAAGTGCATATCACAGGGCCTGGCTGACTGGTTCTCCCTAACTTTGCACCCTTGGCCAATTGTCCACTGTGCTGAATGTAAGTCTCCTTATCAG
Seq C2 exon
AAAGCTCCCAGTGAGGAACTGGTCTTCTGGAGACTCTGTGTGGCATAGAGTGATTCAACCACCTTAAGAAGACCTCTGGCTTTCCTGGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135702-CHST5:NM_024533:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)