HsaINT0035295 @ hg38
Intron Retention
Gene
ENSG00000135702 | CHST5
Description
carbohydrate sulfotransferase 5 [Source:HGNC Symbol;Acc:HGNC:1973]
Coordinates
chr16:75528535-75533183:-
Coord C1 exon
chr16:75533089-75533183
Coord A exon
chr16:75531641-75533088
Coord C2 exon
chr16:75528535-75531640
Length
1448 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTCCTTCCTGCTTTGCCAGATG
3' ss Score
9.56
Exon sequences
Seq C1 exon
AAAGCTCCCAGTGAGGAACTGGTCTTCTGGAGACTCTGTGTGGCATAGAGTGATTCAACCACCTTAAGAAGACCTCTGGCTTTCCTGGAACACAG
Seq A exon
GTAACAAACACCTTAGCTTGGGATCAAGATCCTCCCTACCCAGGGAAGGGCTGGGCTGGCCAGGACAACTGTGTTTGGGCCAGAGCAGCAGGGTCCTGCACTCTGCAGGGGGCAATCACAGGTGGGAGAGGCCCACAGCCTGGGATCAGAAGTGCCAGGAGCTTCGGAACAGGAGTCCTGGAGTCCCAGCTTTCTTGCTGTCTCTCTAAGCCTTGAGTCTTTCACCTGAAAAATTGACATCATCATGCCCACCTCAGGGCCCAGAGTTAAGTTATCCAGTGGACTCGAAGCACCTAGCACTTGTGATCATTGAAGTCAGCAAATATGAGTTCCCTTCCTTTCTGGCACTCTGTTGGCAAGGGAGCTCACCATCCATCAGCCAGCACTGGAAAAAGTACAGTTGCACTTGTAGCGGAGGTGGGGGGCTACTCTCCTCATCTTCCAGGTTTTCCAGGAGTGGGTGTGGGGATCCAGAAGGCAGCTCGGGAGTCAGCAGGTGACAGAGGTGTTGGGCATCCTCCGCTCACTCCTGTCCCCGCATTGAGGCGAAGGAGCAGAGGTGAGATCTGCTCACAAGTTAGACCCTGGCTTCTCTCAGTGGGCAGTGTGGACAGGGGAAGGGGGCAGGCAAGGAGCAAAGGATGCAGGAGCAAGGAGAAAACTTCCAGGCTCCTCCCTTCCAAAGTCACCCAGCCTTGAGATCATTGCAGATGCAACAGGTGCAAACAGAAGAACACTTTAGGACCTTGGAATGCGGGAGGCTGGCTCAGTGTTCCTTCCACCCTGTGAGAAATGCGTGACATTCTTAAGGTCCACTAAAGGCTCAGGGTGGTTGGACGCCAGAGGATGGCCTGGGAGATACAGGGATTGGAAGGGTAGGTGGCCTGTGGGTGTCTCCTCTGTGGGGAGACTCACCAGGTGGAGGGGGTTCTTTCTCTCCAGATGTAGCTCAGCACAGGGACAGTAACAGTAACAGGGGCATGTGTGTAAGGAATGCTTCCCCAGGCCCTCCCCTCATAGGTGTTTGCAGCAGCATCCATCACAACAGCTCTAAGAGGTTAAATATTGCAAATCCCATTCTACAGAGGTGCAAATTGAGCCTCAGAGAAGTTAAGTCACTTGCCCCAGGTCTCATAGCTCCCCATTGGCAGTGCTGGGATTTGGAGCCAGCTCTCTCGCTTCCATCCATCAGGAGACCCCGCCAGTTCCCAGCCATTTGGAGAAATGCCCTACTCAGACTTATTCAACCTCAGCAAGCCTGGTGGTGGTGTGACATCCGCCTAAACCGTCATCAAGCCCTTTAGCTCCACAACCCAAAAGGGTCTCTCTACGAGTTATCCTGAAGCAAAAGGCAGGCAGGACAGCTCTGTTCCCACCCTGGGGAGCTTTCTATGTACAGGGCTGTCTCTCTGTAGGGCTCTGATCTCCTCTCCTTCCTGCTTTGCCAG
Seq C2 exon
ATGTCGAGACATCTCCCATGGATTTGTGATCAGCGTTGCAGCTCTCCCAGCAGCCCTGGACGGTGGTGAGTCCCCTCAGCTGGCCAGGACAGTACTCTGCTCTCACCTCTCTGCTTCTTGGGCTCCATCCCAGCTCCCCATCAACTGATCTTCTTGCAAACCCACAGGGCTCCAGGACACCCTCCTTCTGGAGCCCATGCTGCCTACAGCACTTCACTCCCCACCAGTGATGACAACAGTTGCTGTTCTTTGTCCACTTTATTTACTTGTTTATCTTTAATGACAAAAGTTTTTTTTTTGTTGTTTTTTTTTTTTTTTTTGAAACGGAGTCTCACTCTTCACTCAGGCTGCAGTGCAGTGGCGCAATCTCAGCTCACTGCCACCTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCATCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTCTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCATAATGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCTGACAAAAGTTTTATACCTGCCTGTTAAAAAAATTATATAATACAGAAGCACACCTTGTAAAAGGTGCAATCCTCAGTTATGGGCATGACTGCGTGTTCCCTTCCCCCATCTTCATTATAATAACCCCCCAATCCCCCCAGATCCTGTGAGCCAGGTACCGGAATTATCCCTCTTTCACACACGGGTAAAGTGATCCGTCACAGAGAGATTTAAGTGATCTTCATAAGCAAGATCATAGGCTAGGAAGTGGCAGAGCCAGGATTCAACCTCGGCGAGCCTGGTGGTGCTCTGACATCCACCGAAGCCCCCATCAAGCCCTTTTAGCTCCACAACCTAAAAGGGTCTCTCTAAGAGGTATCCTGAAGCAAAAGACAGGAGTTCTCTTTGAAACATAGTATTTCTCTCTACAGATAGATAGCCTGTAGGTATGTAAGTAGGTGGGTGGGTGGGTAGGTAGACAGTTTGATGATATCCCACATTATTCTGCAACTGGACTTCTGCTGTGAGCACAGACTATATTCTGGCCTATGTCTTGACTCCGTATTCCTGGGAAAGTGCTCGACTGAGACCTTGGGAGTCTTGGGAAGTCCAATGGGTAGGGTAGCCGAATCTGAGGGCTGATCCCTGAGGGCACTGGGCAGTAATTGGGGCATGGGATGGGCATGAGGGCCCGGGTCCCTAAAGTTGCCCACTCCACCCGAAGGCCCCCAGCCGCCCGCATGTGGCTGCCACGGTTCTCCAGCAAGACAGTGACAGTGCTCCTCCTGGCACAGACCACCTGCCTCCTGCTCTTCATCATCTCCCGGCCAGGGCCCTCATCCCCAGCCGGCGGCGAGGATCGTGTGCACGTGCTGGTGCTGTCCTCGTGGCGCTCGGGCTCATCCTTCTTGGGCCAGCTCTTCAGCCAGCACCCCGACGTCTTCTACCTGATGGAGCCCGCGTGGCATGTGTGGACCACCCTGTCGCAGGGCAGCGCGGCAACGCTGCACATGGCCGTGCGCGACCTGATGCGCTCTATCTTTTTGTGCGACATGGACGTGTTTGATGCCTACATGCCACAGAGCCGAAACCTGTCCGCCTTTTTCAACTGGGCAACGAGCCGCGCGCTGTGCTCGCCGCCCGCCTGCAGCGCCTTTCCCCGAGGCACCATCAGCAAGCAGGACGTATGCAAGACACTGTGCACGCGGCAGCCATTCAGCCTGGCCCGGGAGGCCTGCCGCTCCTACAGCCACGTGGTGCTCAAGGAGGTGCGCTTCTTCAACCTGCAGGTGCTCTACCCGCTGCTCAGCGACCCCGCGCTCAACCTGCGCATCGTGCACCTGGTGCGCGACCCGCGGGCCGTGCTGCGCTCCCGGGAGGCGGCGGGCCCGATACTGGCACGCGACAACGGCATCGTGCTGGGCACCAACGGCAAGTGGGTGGAGGCCGACCCTCACCTGCGCCTGATTCGCGAGGTGTGCCGCAGCCACGTGCGCATCGCCGAGGCCGCCACACTCAAGCCGCCACCCTTCCTGCGCGGCCGCTACCGCCTGGTGCGCTTCGAGGACCTGGCGCGGGAGCCGCTGGCAGAGATCCGCGCACTCTACGCCTTCACCGGCCTGACCCTCACGCCACAGCTCGAGGCCTGGATCCACAACATCACCCACGGGTCGGGGATCGGCAAGCCAATCGAGGCCTTCCATACTTCGTCTAGGAATGCGCGCAACGTCTCCCAGGCCTGGCGCCACGCGTTGCCCTTCACTAAGATCCTGCGCGTGCAGGAGGTGTGCGCCGGCGCGCTGCAGCTGCTGGGCTACCGGCCTGTGTACTCTGCGGACCAGCAGCGTGACCTCACCCTGGATCTGGTGCTGCCACGAGGCCCAGACCACTTCAGCTGGGCATCGCCTGACTGAGAACTCTGGGCCTTAGAGCAGGCCCCGAACTGTGGTCGCCAGGCCCAGGAGGCGACTGCATGGTGGAGAGGGAGCTGGGGCGCATGGGGAAGCAGGTCCCTACTATCAACCGGGAGTTTGGGGTCCTCCCCTGAAGTAGGCAAGGACTGCACGTTTCTTTCTCTCCTGATTCTCGGTTTTCCTTTGAGTCTTCTGGAGCTGCCTTCTCATCAGGTGCACTCTTCATGGAAAGCAACTCTTGCCCCTACCTCTTCTGGGCGCAGGGAGTAAGTTACTGCTAAATTAAATTAAATGTGTGCCAGGCCGGGTGCGGTGGCTCATGCCTGTAATCCCAGCATTTTGAGAGGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCGAAACCAGCCTGGCCAACATAGTGAAACCCCCTCTCTACTAAAAATGCAAAAATTAGTCCGGCGTGGTGGCACACTCCTGTAATCCCAGCTACTTAGGAGGCTGAGGTGGGAGAATCACTTGGACTCCAGAGGTGGAGGTTGCAGTAAGCTGAGATCATGCCACTGCACCCTAGCTTGGGTGGCAGAGCAAGACTCTATCAAAAAAATAAGTAATAAATTTGTTCAAAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135702:ENST00000336257:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0068522=Sulfotransfer_1=WD(100=77.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGAACTGGTCTTCTGGA
R:
AGTGGACAAAGAACAGCAACTG
Band lengths:
344-1792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development