HsaINT0035296 @ hg19
Intron Retention
Gene
ENSG00000183196 | CHST6
Description
carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 [Source:HGNC Symbol;Acc:6938]
Coordinates
chr16:75515715-75528926:-
Coord C1 exon
chr16:75528838-75528926
Coord A exon
chr16:75515790-75528837
Coord C2 exon
chr16:75515715-75515789
Length
13048 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGT
5' ss Score
7.73
3' ss Seq
TCGCCCTCCTGCTTTACCAGGTG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GACGACGTTTGGGAGCCTTTGCTGAGTCCAGGGAGAGAGGCGTCCCCCACCGTGCCGCTGCAGCTCGGGCAGAGCCGCCAAGCTTTGGG
Seq A exon
GTACGTTGGTTCTTCATTCTCCGCGGGGGATGTCCCCACACTCGGGTCGGCTGGGGGCCGGGCTGGTGGCACAGCTGGGGACGCTCCTCTGTCCTGCACCGGGGACCTGGGGTGGCGGGAAGAGCTGGGAGTGGCTTTTCCATCAGCAACGTGGAAAGGGCATCGCCGCTGTTGGCGCCGGTTTGGAAGTGTCTTGCTGGGGCTTCGGCTGCGCAGGAGAATCCTCACTGCGAGGGGAGAACCCCTTTTGTCTCGATACTTGAGTTTCAAAGGACATGACTTTCAAAAGCTCTCCAAGGGCTTTTTCCATAGAATTATTGAGAGACGGTAGCTTGGCGGGTTGATTTGGAACCAGACCCAGGGGAATTGGAGTCCTGCGTCACTGCTTCTGACGGCTTCATCTTGGGCTTCAGGACAGGCCCTCTGGGCCTCAGGACAGGTGCCTAGCAAATGTTGACTTTCCTTTCTCCTCCCTTTTTCACAGAGGCAAGGCAGTCAAGTTTCCCATTTTTGAGGATGGGAAAACTGAGGCCTGAAGAGCAGAAAGGAGTTGGCTGACTTAAACCCACAAGCGAGTAGGCCAAGTACCAGGGCCTCTGAGGGTGCTATGCTGCTCCGGGAGCTGGGGCTGGGCTCCTCTCCAGCCTGAGAGGCCGGAACTTTTCTGGCTTTGTTCTACAAACAGAGTCAACTGGAGTATAGAGAGCCAGAGAGTGACTTGCTCTAAGTCACACCCCTCACTGGTAGTAGAGACAGGATTTGAACCCAATCCGGCTTCAGAAGCCAAGCTTCTAAGGCCAGTCGCAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATAAGCTGGGCATGGTGGTGAGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCGGTACTTCACTCCAGTCTGGACAACAGCGAGACTCCATCTCAGAAAAAACACAAGCCAGGCCTCTAGCCATGACTTTCCAGCGTCTTCTGTTTTGTTTGCCCTTGTGGGGACCCTGTCTGTGCCTGCCACATTCTGTTGCTGGGGCACTGGGGCACCTGAATCTGGTAGAGCCATTGTCCTTGGGTTTTCCTCATTCAAAGACTTTCCCTTGGATTCATAGAATATAAGTGTGGCCCAGGAAGGAAGATTGCTAAGCAAATACTCATAAGTGCACTATGCGCCAGACTTTGTTCTGCTTTACAAATATCCACTCACTCACTCTTTCAATCAAGCCCATGAGTTGGGTTATATTGTTTCCCCCACTTTACAGATTTTTTTTTTTTTTTTTGATACGGAGTCTCGCTCTGTCACCGAGGCTGGAGTGCAGTGAAAGTGACATAATCTCGGCTCACTGCAACCTCTCCGCATCCCAGGTTCAAGCGATTCTCCTGCCTCAAATTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCGGCTAATTTTTGTATTTTTAGTAAAGATGGGGTTTCACTATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGTGATCCGCCCTCCTCAGCCTCGCAAAGTGCTGGGATTACAGGTGTGAGCCACCGCACCTGACCTTCCAGATTTTTTTTTAACCAAGCAGGCACAGAAGGAAGTAACTTGCACAAGATCGCTCAGTAAATGGTCAAGTGGGATTCACACTCTTAACCTCAGTGCTCTATACCTACTGTCTTTAATGAGACAGACACCATTCTGCTTCTAGTGTCTTGGGCGGGGAAATGGGTCCAGAAATACATGAACAAGATTGTTCTGGGTAGTGATAATAGTATTAATAATAATTTCTCACTATCACCTATTAGTCAATATTGAAATATATCTGATTACCTCTAGGGTATCTCCTGGCAGATGTTTTTTTCAAATCAGAATCCACACAAGGTCCACATGTTGCATTTGACTATGTGTTTTTTGGTTTTGGTTTTTGTTTTTGTTTTTGTTTGAGATGGAGTCTCTCTCTGTCGCCCAGACTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAGCTTCGGACTCCTGGCTCCAGTGATTCTCCTGCCTCAGCCTCCTGGGTAGCTAGGATTACAAGCACGTGCCACCACACCTGGCTACTTTTTGTGTATTTAGTAAAGACAGGGTTTCACCATGTTTGGCCAGGCTGGTCTCCAACTCCTGACCTAAGGTGATCTGCCTGTCTTGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCCTGAGTTATTTTCCTATAAAATAGTCTCTTCCTTTTTCTGTCATAGATTTGGAAGTATGATTTACTTTTAAAAAATAAGGTAATTAAAATAAATGGTTAATAAACCAGGGAACATTCCAGATTATCTCTGTAATGAGAGGGCTCTGTCAATACTTAGGGAAACAGGCAAATGTGCTAAAAGCACAGTCCCACTCCGTACCCTGTGTGTGTTGCTGCACAGAAGAAGTGGGGAACCCTCAGACTTTATGGCCTCCAGCTGTAAGGTACTACAATTTAGACCAAGGCAGGTGCTGTTTGAAGTGCCCTGTGAGAATCCCTAAAGCTCCCAGCCAAGGAAAAGGGTTTGTGTGTTGCTATCTGCTTATCTGCTCTGAAATGCCCCAGGGCAGTGGCTCTGAGCCAGGGAGGCTTGAGGCTCCTTTCCCAGGCTAATTAGAATTCATTTCCCAGTAGATTTTGAAGGCAGATCTGTTTTCTCCATCAGCATCTGGGCCTTGCAGTCCCAGCCCCCTGCCTCTGGGGGATGCCATGCAGCTGCATCACCAGGACTGGCAGAGTTGGCAGATGTGGCCAGGGCTTGGGGGCCAGGCACAGCTTCAGCCACAGCCTGGCCCAGCCCACAGTCCTGGTGTTGAGAGTGTGCATGGGAGCTCTGACACCTTTTAGTGCAGAGCGGGTAATTCATGCCCCTGGACTTCTCTGGCTAACTGGGTACTCAGGTCAGCTGGGAGATGGTTTTGCAGGCACCTGTCTCTCTGCAGTGATAGCTGGACAAAGACAAACTCCACCTAAGCCTCCTTTAACCAACTAGAAATTTCTGATTTTATCATTGTAGTAAAAGTCTGATGTAGACTATCTGGAAAATGCAGCAAAGCACTAATAAGAAAATAAATTACCAGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGACTGAGGCAGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCGGTCTCTACTAAAAAATACAAAAAATTAGCCAGGCGTGGCGTCGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCAGAGTTTGCAGTAAGCCGAGATCGTGCCACTGCACTCCAGCCTAGGCGACAGAGCAAGACTCCGTCTCAAAAAATAAAAATAAAAAAAAATTACCTGTAAACTGGCCATAGAAAAATAAACACCAAACTTCAGTGTGCATCTCCCATACTTTGTATTTTTTTAAATAATGGCTTTATTGAGATAGAATTCATGTATGTTAAAGTTTATATATATTATATATAAGTATATTATATTTTATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTTTTTTAAGACGGAGTTTCACTCTTGTCACCCAAGCTGGAGTGCAGTGGCTTGATTTCAGCTCACTGCAAACTCTGCCTTCCTGACCTCAGGTGATCCACCCATTTAATCCAAAGTGCTGGGATTACATGCGTGAGCCACTGCGTCCGGCCCAAAGTTTATATTTTAAAAGTGTACAGTTCACTGGCTTATAGTATATTCAGTGTTTTCACATTGAACTTTGTATATATCAGTACTTTATTCTTTTTTATTGCAGATAATTGTCTACTGTGTGGTTACACCACATTTTGTTTATCTATTCATCAGCTGATAGACATTAGGGATGTCTCCACTTTTTGGCTATTACGAATAATGCTGCTGTGCAAATTCATGAGCAGGTTTTCATGTGGGCTTGTATGTTCAGTTCTCTAGGGTGTGTACCCAGGAGTGGATCTGCTGTATCATATGGTCACTCTATTCAACCTTTCGAGAAACCACCAAATTGTTTCTTCAGGAAATGCACCATCTGACATCCCCATTTTATGAGGATCCCCACGTCTCTGTCATCTCACCAACACTTGTAATTATATATTATTTATTATAATTACCTTTTTAAGATTGTAACCTTCTTGGTGGATGGAAAGTGACTTGTCACTGTGGTTTAATTTGCATTTCCCCGCTGCCTAAAAATGTTAAGCATCTTTCCTTTTTTTTTGAGACGGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACCACAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGTTTACAGGCATGCGCCACCATGCCTGGCTAATTTTGTATTCTTAGTAGAGACGGAATTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCACCAGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCTTTTTTTTTTTTTTTTTTTTTTTGAGGCAAAGTCTCGCTCTTGTTCCCCAGGCTAGAATGCAATGGCACAACCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCCTCCCCGCCGAGTAGCTGGGATTACAGGTGCCTGCCACCACGCCTGGCTAGTTTTTGGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACACACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGGGCCACTGCGCCTGGTTGAGCATCTTTCCATTTGTGTATCTTCTTCAGAGAAACTTCTCCCAAATCCTTTACTCATTTTAATTTTTTTCTTTATTCATTCTTAAATTTATTTATTCTTATATTTCTTAAATATGCTTATTCTTAAAAAACTAAATAGGATATTTGCCTATTTTGTGTTGAGTTGTAAGAGCTCTTCTTATATTCTGGGTACAAGTCCCATTCTGTAGACATGATTTGCAACTGTTTTCTCCCATCTGTGAGTGTTCTTTGATATTCGTGTATTTTTAACACCCAGCCAACTGTGTGAAAAATACATGCACATCTAAGAACACACACAGATGGGAGAAATGTATATATGTATGTCAGCTTTGTTACTTCTGTTTTCCACTTGACACTATGTAGCGAAGAGCTCCAAGGTTACACTGCTAGACTTCCAACTCTGACTCAGCAGCCACTGTGTGAATTCTTCCCGCAAGTCCCTTTTCTTTTTTCTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTTTGTTGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCTGGGCTCAAGCGATTCTTCTGCCTCATCTTCACGAGTAGCTGGGATTACAGGCATGCACCACCACGCCTAGCTAATTTTTGTATTTTTAGTACAGTTGGGGTTTCGTCATGTTGTCCAGGCTGGTCTTGAACTCCTGACCTCAGGTAATCCGCCCGCCTCGGCCTCCCAAAGTGCTGTGATTACAGGCATCAGTCACCATGCCCTGCCTCCCTTAATTTTTCTACACCTCACTTTCCTCATCTATAAAATAGGGATGATCATCAGGTCCATGTCATAGGGTTGCTGTGAGGATCAAATCAGAAAATGGATGGGAAAGACTGGGCATGTAGGAAACCCTCATAGATGATGTTTGCAGGGGTTCCTTGTTCCTGCCCCCCATGAACACTCACCTTCCATCTTTATGTTTTATGTTTTGTTTTTGGTTTTGTTTTTCTTTGAGACGAAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTAGGCTCACTGCAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCATTACAGACCTCATGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTGTTTTATGTTTTATGTTCCCTGCTTTATGTTTTGTCTCATTTTCTGTTTTCTTCTCTCTTCTTTCTTCCTCTTTCTTTTGCTCCTTGTTAGCCTTCCCCCTTCCAAATGCCCAGGGCTCCACTAGAGCAGTTTGGCCCCAGTTGTAGCTCTTGATGCCTCAAGGCCACTGACTCCTCATTGGGTATGTTTTTTCCAGCCTTTGGGATTCTTTTTTTTTTTTTTTTCTCCTTGTGACGGGGCTTTGCTCTTGTTGCCCAGGCTGGAATGCAATGGCTCATGATCTCTGCTCACTGCAACCTCCACCTCCCAGACTCAAACAATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGGTTACAAATAGGCACCTGCCACCATGGTGGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTATAGACATGAGCCACCGTGCCCAGGTGGCTTTGGGATTCTCGAACAGGGATGACCTCCAGCCAACTCTAAACAGAGAAATCTAAACCTGGGATCTATACCTAGTGTTACATTTTGTTCCCTTAGATTCTATGAACAGGGCTGGAACAGGCTGGTAACAAGAAGAGCTGCTGTGTCTTGTTGTTGTTTTGGTTTTGTTTGTTTGTTTGTTTTTTGAGGTGGAGTGTTACTCTGTTGCCAGGCTAGAGTGCAGTGGCATGATCTGAGCTCACTGCAACCTCTGCCTCCTGGGTTCCAGCGATTCTCCTGACTCCGCCTCCCGAGTAGCTGGGATTACAGGTGCCCACCACCACACCTGGCTAATTTTTGTATTTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTAGGGGGGACGGAGTCTCACTCTGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAGCTCTGCCTCCCAGATTCACGCCATTCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTAGCCAAGAAGATGTCGATCTCTTGACCTTGTGATCCACCCTACTCAGCCTCCCAAGTGCTATGATTACAGGCGTGAGCCACCACGCCTGGCCAAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGTCAGGCTTGTCCCAAACTCCTGACCTCAGGTGAGCCACCTGCCTCAGCCTCCCAAAATGCTGGTATTACAGGTGTGAGCCACCACTCCCGGCCTGGAGCTGCTGTGTCGAGGGTAGGCAGAGCTTGGCTGGAAGTGAGTGCTGCCCAGAGAGCCAGGACTCCTGGGCTCCAGCTCAACCCTGCTATGGAAAACCATCCTTGGTCAATGTCTTGCTTTTCCTATTTGCAAATCAGGCAGAACCATAGCTCCTTCCTAGGTCTCTCAGGCCAGGCCAAGAAATGGTAAGGGATGTTTAGAAGATCCTGTGACTTTAAGGTGCTCGGCAGAAAGCCATGTGGGCTACTGGGGAATTCCTCCCTCTGGATGTGGACCACAGAGTATCTGAGTGCAATGGCAAGTATTTGTTCATGTCCTCTACTCATTTGTTGTTTGGGACATTCCTTGACATGACTCTTACTATCTTCTTCAGTCAGGATTCTTTACTTTTTATTGAAGTATGCCATTCTTCAGAGTACATATAATGAAAGTACAGCTTGGTGAACTTTCACAAACTGAACACACCCATGTAATTAGCACTGTCAGAGAGAAACAACGCAGGGCCAGCCCCCAGAAGCTCTGCCCCTGCACCCTTCCCACCTCACCCCACCAAGGGTTTCACTGTCACTATCTAATCACCACTCTTGGGTGTAAGTGACAGAAACTCATCTCCCAAGGACTTAAGCAGAAAGTGAATGCTTCCCTCAGCTGAGGGGTCCATGGGTAAGCCTTGCACAACTGGATCCAAATGCTTAGATGGTGCTGTCAGCTTGCCTGTGAACTTTCTCTGCTGAGTTCTCTTCTGTTGTTGATTTTAAACCTAGGCAGTTTCCTCTTCCCTTGTGATCAACAAAACTCCAGAATTGCAGTTGAGCAGATGTCCCATTCCTAGGCCAATAGTTCTGTGTGGGCTGGGGGGGCAGGGTCAGTGTGTGGAATATAGAGGTGGGTCTGTCTTGGGACACATGACCCTTAGGAGCCGGGAGTGGTGGATCAGCCCCATCTGAGCCACATGCACTTTTGAGTGGGTGAGGGTGATTCCCCAGGGAAAAGCCTAGAGACTGTTATCAGAAGGAAAAACGGGTACTGAGTGGACAGAACCAAGCATGTCCAGTGCACCTGTGCAGTGCTGATCCTCACACTAGTCACCGGAGAACAGGTGTTCGCTTGCGAAAAACCACAATCCAAAGTTCCGGGTTGCTCACAGGCAAGAAGGGAAAGCAAAGTACAATGCAGGGCAGAGTGGGGCATGCCTTGACAGGCACAGAGGAGGTGGCTGCAGGCGAGGCTGAAATGCCTCCCAGTGGGAGTCAGGGCTGCGCACTCATAGCATGGGTGAGGGAGTTGGGAGAGATGGAGCTTGTTTGATGAACACTGATTATTCCCGGCCATCTGAAGCCTGGGATATGGGAGATAAGGCTGGAAAGCTGAAGGTTACTGAAAAGGAGAATGACAGGATCAGATGTGTGGTGTAGGCACCTCTGGGGGCAACTGTACAAGATGGACTGAAGGGAGGCCAGGTGGGGACTTTGCTGGAATCCAGGAGATAAGGATGCAGCCAGGACCAGCATGACCCTCCCGCGGCTGGATGTCCAGGCCATCCACTGGGACACCATCAGGTCCCTTGACCGTCACATAGCCAGATGTGTCTTCAGTGTCCCCAACTTGATTGTCAGCTCTGCCAGGATCGGGATCCTGAGCACTGGCTTTCCTGGATGAATCTTTTGCTGATCTTATCTCTTCTCTATTTTCCAACCTTTATCTGTCATTTATGTTTTTTGTTCTACTTTTCACATCTTTTAAATTTTTCTTTCAACGTTTCTAATATCTAATGCAATTAGCCCCAAGGAAAACTAAGGGAAACAAGAAAAAACAAGAAAGGAAATGTACTCTCAGTACTTCAGCTGTGAGCTGTGAGCTTCAGCTGTGAGCTGGAGTGTTTTGCTCTGGTTTTAGGTTTTTGATTTTTTTTAAGAAAGAGGGTCACACTCTGTTGCCCAAGCTGGTGAGCAGTAGAATGATATAACTCACTGCAACCTTGAACTCCTGGGCTCAAGAGATCCTCCCACCTTGGCCTCCCAAAGTGCTAGGATTACAGGCACGAGCCACCGTGCCTGGCCTCCAGGCATATTTTATCCTTTCTCAAGCTATGTGTAGTGTTTTGACAAAAATAAATTTTAAAAAGAGTTAATGTCAAAAAAAGTTTCTGTGACTTAAGAAGGACCACTGCTTAGGGTGCTCCTCCTGGGTACCAAAACAAGAAACAGAACTTTCTATTCCCTTTATGGCCTCTTGTACTTTTTAGTTCCACCCTCCTCCTGAAAAAATATGATCATTTTCATCATCATCATCACCATCATCACCATTAATTACTTGTTGGAAATTTAAAGCAGAATTGCCTCTGAGGTTGGAAGGCTGGAGAGGGCATGAGAGATAGGAAACGTCACTTTCTTCTGCCTGACTGGCCTTGTGCTCTGGTGTGGGGCTGTGTCTGCCCAGGGGGTGTGGCCTCTTTTCCTGTCTTCACATATGAAACATGAGCTGGCAATGCCCTCATCTTTACCTTGAGTTTTTTTGTTTGTTTGTTTTGTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTACAGTGGCGCAATCTCAGCTCACTGCAACCTCCATCTCCCGGGTTCAAATGATTCTCCTGCCTCAGCTTCCCAAGTACCTGGGACTACAGGCACTCACCACCACACCCGGCTAATTTTTGTATTTTTAGTAGGGTTTTGTCATGTTGGTCAGGCTGGTCTCGATCTACTGACCTCTAGTGATCTGCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCGTGGCTTAGAATTTTATACAACACCTATGTGTTAACTTTTCCAAAAAGTAAACATATAATAAATATGTGCCCCTCATCAAGGGAAGACTTTCAAGGGGGAGATAGGCCTTCCAGGATGGGAAAGGGCACTGGACAAAGGCTCAGGACTGCGACACCCACCACAGAGCCCTGCAGTGAGAGTCTGGTTCTTCGATGTATTTATGTATGTTTGTTTGTTTATTTATTTATTTACTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCACCTCCTGGATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTGCCATCATGCCTGGCTATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGTCAGGCTAGTCTCAAATTCCTGACCTTAGGTGATCCACCCGCCTCAGCCTCCCGAAGTGCTGGGTTTACAGGCGTGAGTCACCGCACACCCGGCCTATTTATTTATTTATTATTTATTTATTTTTGAGACAGGGTCTTTCTCCGTTTTCCAGGCTGGAGTGCAGTCACACAGTCTCTGCTCACTGCAACCTGTGCCTCCTAGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAGTAGTTGGGACTACAGGTCCGCGCCACTGCACTGGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTGGCCATGTTGCCCAGGCTGGTCTTGAGCTTCTGGGCCCAAGCAATTCACCCGCCTCAGCCTCCCAAAGTGCCCTAATTACAGGCATGAGTTACCGTACCCGGCTGGCTCTTGGATTTAAGCCCCTGCCCTTCCTCCTTCTTACTGGATATTCATGTCTCTGAGCCCCACTGCTTCAATTAAAACAGAGAGGTATGGTCATTTCTGCCTCCCAGGGACTTGGGATGATAGCATTTAATCATGAAGACAGAAGTACCTATCACAGGGCCTGCCTGACTTGTTCTTCCTAATGTCAAAACCTTGGCCCAAATGTCTACTGTGCTGAACGTAAGGCTCCTATCAGAATGCTCTCAGCTAGGAACTGGTCTTCTGGAGACTCTGTGGCGTAGGATGATTCAACCACCTTCCTAGTTCTTGAGTTTCAGTAATAGGATCTCATAGCAGTTCCTGTAGTGTGTGAGTCACTTAAGAAGACCTCTGGCTTCCCTGGAACACAGGTAACAAATACCTTGGCTTGGGATCAAGATCCTCCCTACCCAGGGAAGGGCTGAGCTGGCCAGGACAACTGTGTTTGGGCCAGAGCAGCAGGGTCCTGCACTCTGCAGGGAGCAATCACAGGTGGGAGAAGCCCACAGCCTGGGATCAGAAGTGCCAGAAGCTTAGGAACAGGAGTCCTGGGGTCCCAGCTTTCTCGCTGTCTCTCCAAGCCTTGAGTCTTTCACCTGAAAAATTGACATCATCGTGCCCACCTCAGGGCCCGTTGAGTTAAGTCATCGCGTGGACTTGAAGCACCTAGCACTTGTGATCATTGAAGTCAGAAAATGAGTTCCCTTCTCTTTCGGCGCCCCATTGGCAGGAAGCCAACCATCGTCAGCCCACTGGCACTGGAGGAGCGTTGATCATGTGCAGAGCAGATGAGTGGCTACTCTCCCTGTCTTCCAGGTTTTCCCAGAGTGGCTGTGGGATCTGGAGTCGGCTGGTGACAGAGCTGCTGGGCATCCTCCACCCACCCCTGTTGCCTCCTGATGAGGGAAATGGGCAGAGAGGAGATCTGCTCACAAGTTAGACCCTGGCTTCTCTCAGTGGGCGATGTGGACAGGGGAAGGGGGCAGGCAAGGAGCAAAGGATGCAGGAGCAAGGAGAAAACTTCCAGGCTCCTCCCTTCCAAAGTCACCCAGCCTTGAGATCATTGCAGATGCAACAGGTGCAAACAGAAGAACACTTTGGGACCTTGGAATGCGGGAAGCTGGCTCAGTGTTCCTTCCACCCTGTGAGACATGTGTGACATTTTTGTTGTTGTTGCTGTTTTGAGACGGAGTTTCCCCCTTGTTGCCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACCACAACCTCTGCTTCCCAGGTTCAAGTGATTTTCCTGCCTCAGCCTCCCTAGTACAGGCATGTGCCACAACGCCTGGCTAATTTTGTATTTTTAGGAGAGATAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCAACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACCAGCATGAACCTCCATACCCGACCTATGTGACATTCTTAAGGTCCACGAAAGGGCTGGTGGTTGGAGGCCAGAGGGTGGCCTGTGAGATACTGGGATTGGAAGAGTAGGTGGCCTGTGGGTGTCTCCTCTGGGGGGAGACTCCCCAGGGGGAGGGGTTCCTCCTCTCCAAACAGTAGCTCAGCACAGGGACAGTAACAGTAATGGGGGCATGTGTGTAAGGAATGCTTTCCCAGGCCCCCTCTTCATAGGTGTTTGCAGCAGCATCTCACAGCCCTAAGAGGTTAAATGTTGCACATCCCATCCTACAGAAGTGGAAATCGAGCCTCAGAGAAGTTGTGTCGCTTTTGGGGCTATCTTCCCCTGTAGAGTGTGACTCCATCGCCCTCCTGCTTTACCAG
Seq C2 exon
GTGCTGAGGAACCTCTAATCATCTCCCATGGATTTGTGATCAGCGTTGCAGCTCTCCCAGCAGCCCTGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183196-CHST6:NM_021615:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)