HsaINT0035574 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128176351-128177763:-
Coord C1 exon
chr9:128177566-128177763
Coord A exon
chr9:128176476-128177565
Coord C2 exon
chr9:128176351-128176475
Length
1090 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTCTTTCCCTCCTGCTGCAGGAG
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTATGGGGCGCCGGGGGCTCCCTGAAGGTCACCATTCTGCAGAGCAGTGACAGCCGGGCCTTTAGCACTGTACCCCTGACACCTGTCCCCCGCCCCAGTGACTCCGTCTCCTCCACCCCTGCGGCTACCAGCACTCCCTCTAAGCAGGCCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCTCCAGCCAGCAG
Seq A exon
GTACTGATACAGGAGATAAGGGTGGGGAGGGGTGGGGCCTGCGTGGAATGCCCAGCCTGCCCTCCCAAGAATGCCTCAGGCTGCAATGGGCCCTGCCCCAAGCAGCCATGCATTTGCTTGGGAAACATTTCCTGACCTGCCAAGAAGGCAGGTTTTGGTGGTTTTGTTTTTTGTTTTGAGACAGGGTCTTACTCTGCCTCCCAGGTTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAGCCTCTACCTCTTGGGCTCAAGCAGGTTTTTAGAGTCAGTCAGACCTGGTTCATATCGGCTCTGAGTAGCTGGGAGACCTTGGAAAGCGAATTCCACCCTGTGCCTGTTTCCTCTTGCATCAGACAAAGGAAAGTTTAGGGTCGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACAAGGTCAGGAGTTTGAGACCAGCCTGAACAACATGGTGAAACCCCGTCTCTACTAAAAATATGTGTTGGCATGCTTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTGTGCTCCAGCCTGGGTAACAGAGCGAGACTCTCAAAACGAAACAAAAAAAAGAAACGTTTAGAATCCACCTCACTGGGTGGTTCTGGGGATTCAGCAATGTGACATTGGAGTCCTGAGCGCAGGCCTGGCCCAAAGTGAGTGTAGCAGTAATCATGATCGCATTGTACTTGTATTACTACTCTTGTGCTGTGAGCTGTGTTACTCTGTGCCTCACCTGGCACAGCCTTGGAGACCTGGATGCTAATCAGGCCGCTCCTTGTCTTTGAGGCACTCACACATTCTCTGGGAGGGGCAGAAGCTCGGGCTGGCATGTACCCTGTGTCTTAGTTTATCATGCCTGCTCTAGCCTACACAAGAGAGAAATGTGTGGTGAGAGAAATGGGCGCACAGTGATGAGGCTGGGGTCTGCCTCCCCAGGCCCCAGCCTTGCCCACTGTTCTGGGCTCACGCCCCAGGCCCATCCCTCTTTCCCTCCTGCTGCAG
Seq C2 exon
GAGTTCCAGGACCACATGTCGGAGCCTCAGCACCAGCAGCGGCTAGGGGAGATCCAGCACATGAGCCAAGCCTGCCTCCTGTCCCTGCTGCCCGTGCCCCGGGACGTCCTGGAGACAGAGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=NA C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTCCCTGAAGGTCAC
R:
TCATCCTCTGTCTCCAGGAC
Band lengths:
310-1400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development