HsaINT0035586 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130940988-130941694:-
Coord C1 exon
chr9:130941352-130941694
Coord A exon
chr9:130941184-130941351
Coord C2 exon
chr9:130940988-130941183
Length
168 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
AGACACAGACATATCCACAGGTC
3' ss Score
1.02
Exon sequences
Seq C1 exon
CTCAGAAGAGCCCACAGAGAAGGAACCTCCAGGGCAGTTACAGGTGAAGGCCCAGCCGCAGGCCCGGATGACAGTACCGAAACAGACACAGACACCAGACCTGCTGCCTGAGGCCCTGGAAGCCCAAGTGCTGCCACGATTCCAGCCACGGGTCCTGCAGGTCCAGGCCCAGGTGCAGTCACAGACTCAGCCGCGGATACCATCCACAGACACCCAGGTGCAGCCAAAGCTGCAGAAGCAGGCGCAAACACAGACCTCTCCAGAGCACTTAGTGCTGCAACAGAAGCAGGTGCAGCCACAGCTGCAGCAGGAGGCAGAGCCACAGAAGCAGGTGCAGCCACAG
Seq A exon
GTACAGCCACAGGCACATTCACAGGGCCCAAGGCAGGTGCAGCTGCAGCAGGAGGCAGAGCCGCTGAAGCAGGTGCAGCCACAGGTGCAGCCCCAGGCACATTCACAGCCCCCAAGGCAGGTGCAGCTGCAGCTGCAGAAGCAGGTCCAGACACAGACATATCCACAG
Seq C2 exon
GTCCACACACAGGCACAGCCAAGCGTCCAGCCACAGGAGCATCCTCCAGCGCAGGTGTCAGTACAGCCACCAGAGCAGACCCATGAGCAGCCTCACACCCAGCCGCAGGTGTCGTTGCTGGCTCCAGAGCAAACACCAGTTGTGGTTCATGTCTGCGGGCTGGAGATGCCACCTGATGCAGTAGAAGCTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131015:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=NA C2=0.961
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGACCTCTCCAGAGCACT
R:
CCGCAGACATGAACCACAACT
Band lengths:
253-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)