HsaINT0036118 @ hg19
Intron Retention
Gene
ENSG00000172322 | CLEC12B
Description
C-type lectin domain family 12, member A [Source:HGNC Symbol;Acc:31713]
Coordinates
chr12:10167122-10168005:+
Coord C1 exon
chr12:10167122-10167340
Coord A exon
chr12:10167341-10167850
Coord C2 exon
chr12:10167851-10168005
Length
510 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
GGGTATAATTTCCTTTTCAGACC
3' ss Score
8.28
Exon sequences
Seq C1 exon
TTTTGCAGATATCTAATGACATTAACTCAGATTCAGAGAAATTGAGTCAACTTCAGAAAACCATCCAACAGCAGCAGGATAACTTATCCCAGCAACTGGGCAACTCCAACAACTTGTCCATGGAGGAGGAATTTCTCAAGTCACAGATCTCCAGTGTACTGAAGAGGCAGGAACAAATGGCCATCAAACTGTGCCAAGAGCTAATCATTCATACTTCAG
Seq A exon
GTAATCAGACTTAGTCCTGCTGACCAGTCAGATGGCATATGTTATCCTGGTCTAAGTTGATCACATGTACCACCTAAGAGTATTGAGAGAGTTATGTCATCCAGTGAACCTTAATGATGTTGCACTAAATTTACACACAGCAAGGAAATATACAAATTCATTTAATATTTTTGAAACCACAGGCAAATTTGGGAAGTATCTTGGAATGATATCAATCTGGATACTTCAACCCCTCATTTTATTAACTATTTCTAGGTGATCATGTTGCTCTGAAAGCTTAAAGGCATAGCTGGTAATTCTGAGGTCAGAAGACTAAGCCATGAAAAGAGAATCCCTGTTGCCCCAACCCATAACCAGGGGTCACTTTTTTTTCAGAGGCTTCTAAAGCAGTATGCTTTCAGGGTGCAGGCTCTCAGTCCCTATTGTTCAATTACATGATTTTGTTTCAAAGCCTTCTCCAGTCACTCTAGAGTCTTCAGTTTATATTATTGGGTATAATTTCCTTTTCAG
Seq C2 exon
ACCACAGATGTAATCCATGTCCTAAGATGTGGCAATGGTACCAAAATAGTTGCTACTATTTTACAACAAATGAGGAGAAAACCTGGGCTAACAGTAGAAAGGACTGCATAGACAAGAACTCCACCCTAGTGAAGATAGACAGTTTGGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172322-CLEC12B:NM_001129998:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGATTCAGAGAAATTGAGTCA
R:
TCCAAACTGTCTATCTTCACTAGGGT
Band lengths:
343-853
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)