HsaINT0036187 @ hg19
Intron Retention
Gene
ENSG00000150048 | CLEC1A
Description
C-type lectin domain family 1, member A [Source:HGNC Symbol;Acc:24355]
Coordinates
chr12:10228103-10234012:-
Coord C1 exon
chr12:10233836-10234012
Coord A exon
chr12:10228255-10233835
Coord C2 exon
chr12:10228103-10228254
Length
5581 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AAAATTGGCTTTTTTCCAAGCAC
3' ss Score
2.06
Exon sequences
Seq C1 exon
TTTTTCAGTACTACCAGCTCTCCAATACTGGTCAAGACACCATTTCTCAAATGGAAGAAAGATTAGGAAATACGTCCCAAGAGTTGCAATCTCTTCAAGTCCAGAATATAAAGCTTGCAGGAAGTCTGCAGCATGTGGCTGAAAAACTCTGTCGTGAGCTGTATAACAAAGCTGGAG
Seq A exon
GTAAGTGTGTCCTGGTCACTCTGTCCCCATGTTGTCTGGAAACAGAGAGATGGATTTCCCGCCGGTGAAAGTGAGAGTCAAGTATTATTTAACTAGAGGTCTGGCAAACTGAAAAAGGGTTTGGGCTTCAAGATCATGATCAGTTGTTGGGATCATGTGATTCATATGTGTCTGTGATACCATGCATCAAGGGACTCTTCAAATGCAGACATTTTAAAACAATAAAAACAATTAACTAAGAATAACCAAAATAAGACTACGAGTAAAGAAAATACAGGGGTATGTCTCAATTTACCTCGGCAAATGTTCTTACAAATTCTTTCCTAGTAAGAAGTAAGCAAACTCATAACTATAGTTCTCAAATCTTAAACAACATACAGGGACTAGTCTGAAAATGCAGATAACCTGAATCAAATTCAAGTTATTTTAATTCAGGATAACTTGGCTGGGTATCAAAAATATGCAGTTTAATAAGGACCACAGATGATGACAGTGCCAATGGTAGGTGAACCACCGTTGATAAAATTACTGCTGGAGAAGTCTAGGAGCATCGCTTCAGTGTGAGTGCATGTGTATTCCTATTCTCCTATTCTTTTCAGGTTTTGTGATAATCCACTTTATTCAGGTCAGCTCTCTCTTCTGCTCTCTTTATCATGCTTACTTAGGAAATGGCATACATGTTCAGGTTTCCACTTTTTATTTCTTTTTTAGGAACTCTGAAGGAGGGCAAAGTCTCCTCATCTACTATACACACACCACTTCCCACCTGAAACAGACATCCTGATTGCATGGCTATGCAGGAGAAAATATTAATAGGCACAGTTTTACTTCTCTAAGTGATTCTTTCCTACATAACTAATGACCTCAATGGTCATAATGTCCTTATTTACTAATTTTTCTTTTTCCTTTTTTTGGGGGTGGGGGGAGATGGAGTCTCACTCTGTTGCCTAGGCTGGAAGGCAGTGACACGATCTCGGCTTGCTGCAACTTCCTCCTCCCAGGTTTAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTGCACCACTGCACCCAGCTAATTTTTTCTTGTATTTTTAGTAGAGATGGGTTTTCACTGTGTTGGGCAGGCTGGTCTTGAACTCCCAACCTCAGGTGTTCCCCCTGCCCCAGCCTCCCAAAGTGCTAGGATTATAAGCGTAAACTACCGTGCCCAGCATTTATTTACAAATTTTTCTAACAAAGCCCAGTGTGCATACTTTCCTTTGTTGGTTGCCATATCTTCAAAAAGATAATCCACTACTTGACAGGCTGAGGCTAGAAGATTGAGCTGAGGAGATCAAGACCAGCCCAGGCAATATAGTAAGATACTATCTCAAAAATTATTTTTATTTTTATTTTTACTTTTATTTTTAATTTTTTTTTTTAAGACAGAGTCTCGCTCTGTCACCTAGACTGGAGTGCAGTGGCATGATCTCGGCTCCCTGCGGTCTCCATCTCCTGGGTTCAAGTGATTCTCGTATCTCCTCTTGGGTAGCTGGGATTACAGGCATGCACCACCACATCTGGCTAATTTTTGTATATTTTAAGTAGAGACGGGGTTTTTCCATGTTGCCCAGGCTGGTCTTGAACTCTGGCCTCAAGTGATCTGCCCGCCTCAGCCTCCCAACTGCTGGGATTACAGGCATGAGCCATTGCACCTGGCTAAAAAAAATTTTTTTTTAAGGTAACCGAGATTTTCCTAACACAAATGGTCTTTCAAATTTTTATTTAGGTATATAAAAACAAACAAAAAGAGAAGCTATGCAAATAAGTTACATTTAATTTAAATATAAAATCTAAATGCAAATATATTAATGCTGCTTCTCATAAAAAATTCTTACATATTTTTGGTTAGATGTCAGTTCTCAGTTTTAATCTGCTACTTTTTATTTCTTACCCTCATCTTACCCATTATCCATCCATCCATCCACCCACTGAAGTGATATTTATGCATTTAGTTCGTACTGCTACCAGTGTGGTTGGAGTATTTACTGAATGCCTACTGATGCATATCTGACAAAACACACAGGATGTCTACTCTCATGGACCACTTACTCTAGTGGGGTAGTAGAAGTAAGTATATTGAAAAACATAAGATGACTAATGTCTTTGTCTGTTTGTGTTGCTATAAAGGAGTACCTGAGCCTGGGTAATTTATACAGAAAAGAGTTTTATTTGGTTAATGATTCTGCAGGCTATACAAGAAACATGGTGCCAGCATCTGCTTCTTCTGAGAGCCTCAGGCAGCTTCCACACATGGGGGAAAGTGCAGCAGGTAATATGACAAGAGTCCAGGAGGCAAGAGATTGGGGAGAGACATGCCAGGCTCTTTTTAACACTCAGTTCTCCTGGGACTCATAGAGCGAGAACTCACCAAGCTGTTCATAAGGGATCTGCTTCCCTGACCGAGACACTTCCCATTAGGCCCCACCTCCAGCACTGAGGATCAAATTCCAATATGAGATTTGGAGGGGACAAATGTTCAAACTATATCAACCAGCATTTCCAAGTTGGCCCCCAACGTTCCTTATTTTAGTACTAAAAGTCCCACATTCTGGGAAACTCTAGGTCCCAGGTATACAGTAATGATCGGCCAACCTAAATACAATGTATGAGAGATTAATCAATCCTATGAGAAATGAAGGTAAACAAGGCAAGAGGGATAAGGAATTCCAGGGTAGTCTGTTGCTACTTTAAATAGAGCTGTCGTAAATCCTGAATTAAGATGATTATATGGTAGCAAAGACTTGAAAAGTTGAGGGAGTTAGCCATGTAATATAGAGAAATAATAAGCTTTAAGTTAAAACAGGAAACAAAAGAGCCTTAAAACATGAATGTATCTGCATATTCCAGGAATAATGAGGAGCTCATGCGGTTGGAGTGGAAGACTAACAGGAGGCTAGGTAGAGATAATGTACAGCATTAGGTGCCTTTGTGAGAGATTTGGCTACTATTTTGAGCAGATGAGGATTAATTATGGGGTTTTAAGCAGAGGAAATACATGATCTGGCATAAGTTTTTAAAGGCTTAATCTACATTCTGTTAAAATTAGACTGGAAGAGGAAAGAATAGCAACAGAGAAATCAGATAAGAGATGGCTGTTACTAAAATCTAGGAGAAATATGATGGTTCTTCTAACTAGGATATTGTTTGTGGAAATGATGGCATGATGGGATATAAATTGATGTGTGAGAAATGAAAGATTCAAAAACAGCTCCAGAATTTGGGGTCAAAACAACTAGAAGCATAGAGATGTGGTCGAGTGAAAGGAAGAAGAATTCTCTGGCTACAAGGGGAAGATTAGAAACCAGGAATGCTGTTTGGGGAGTTAGATATATGAGGGAAAATTCTGGGCCAGACACATACACAGACTTACATTCCTTTTGCCCAAAACACAGCAAAAATAAAGGAGAAATGGAGAGAGAAAGGACTATAAGAAAAAAAAAGACGATTAGCCTTTTCTTTGGATGACATATTTTCATGTATTTATGAAATGGAATGCCCGTCCTGGGGTTATTGGCCTTGCTAATATGAACATTATTGTTTATTGATCCTAAATATCTATAAACATTTATTGCACTATATAATATAAAAATGGTAATTTATAGGTAAAGAGAGTTCATAGAAAGTGTACATGTTCCGTTTAGAAATTAGTATTTTATTTTTCCTAGGTGTATATGCCATGGACAAAACATTTGAGAACAGTTCATTTTCAGTCCACCCGTTTTTCCGGCCAAAAATATGCATTTTTCTCCTTTAAAAATATATATTTTTGGGGGGAGCAGAGAGGTGGGGAAAACAGGGTCTCACTCTGTTGTCTAGGCTGGAATGGAGGGTATATGTATCTGTATATCTATCTATATCTATGTCTGTACCTATATCTATATGTATATAGAGAGAAATGAATTTCTTCTAATCTGTATTCTATTTTCCTCCTCCAATGGTTTAAGTAATAGTATATCAAATATTAGGTAGTTGAAGTTAAGAAAGTAAAGAAGTTTCTCTATCTCTGTCTCTTTAGTTACATAGTATCACTACCTATTTCACATAAGGCTCTCAGTCCTTTAGTCTCTCACCTTTTGATCTAATTGTCCCTTGCTTCCTCCTAAACATTCATTGAAAATTTCTCTATTAATTCCCCTACAAGTAGGAGACTTGTTTTTACATAGAGCACATAGAGGGTCACTTATCATATCTGAAGACTGAAGGTATTTAAGAAAACATTGTATGTGAGACTGGAATGAGGTATTAATACACTGTACCAAAATTGCAGTTACATAGTTTTTATTTATTGAATCCAGAGCAGAATGAACCAAGATTCTCCTTGCTGAGTCCAGTTGCTGCTTCATAATCTTTTTCAGCACAGCACTCCAAGCATATATCACCCATCTAAGTTCTCACAACAACAGGGACCATAGTTGAAACGGACCTTTATTAAATGCTTTTTATGCATAAGTCTCTGCACAAACTGGACTCTGTTTTTTACGTATTTACTCTTTACAATAATCCTTTTAGGTAAGCATCATTCCCATTCTTGTTCTGTGTTTTAGAACGTCTGAGGCTCCCTGCATTTTTGCTTGAGTCTCTCCAGGTTGTTACATTTCTCCTGGTAGAATTCTGAAGCAAGCCGACCTGTCTGAGAGAGTGCAAAAGCTATTGAGCTCCACAGCAAGTTTTTCATAACATGACAAAGATATCCTTCTAAGTTATTTATTTATTTATTTATATTTTGTTTTACTTCATGAAATATTTCAAATTTACAAGAAGATATAAACAATAATATAACACCTACCTGTGTATTAGCCACTGAGATTTTAACATGTTAACTAGATCGCTTTTAAAATAAAGAAATTGTTATAGATATGACTTGGGTTCTCATCCCACTACAGACCCACAAGAGACTGGATTAGGTTCCTAACTCTAAATGACCCAAGGTCATGTATCCACATAGGGTTAAAACTATAGCTCTCAGGGCTTGGCACCTATATTTGCGATCACTACCCATACTTCTCTGGCCTGGATGCCCAATTTAATTTGTGACACATGGAGATTCAGCATTCTAACTTCAGGCTTGCCTCAGTATTTTTTTCCTTAAAAAGACTCCACATCATATTGGTATATACCGTATTTTTTAAAACTTATTTTACTATTATGTAAGATAATTTTGAGGAGAACATTATAGAAACTTTATTTCCTAAACACAATGCAGTTGGAGTTTCTGTACATTTGAGATGCTTTGTGAAATTGAATATTCTCTTCATGTGCTGAATTTCATAGGCAAGTGGCAAGAAAGTTCTAATCATTTATTACTAGATTCCACATAAGCAATTAGTGTCTGTTTTAATTTCTACAACATACTTAGGACCAGTTATAATTCCTGGCAGTTAGTAGGTATCCAGTAAACATTGTAGTTATCATTGCCTGGGTAATTAATTAAATATTGAGGAAGAGTTAATTCTTTCTTAGGACATCAAATACTATATAATTTCAAGAGAGGAGCAAGACAGACTCATGCAGAAAATAACAATAAAATTGGCTTTTTTCCAAG
Seq C2 exon
CACACAGGTGCAGCCCTTGTACAGAACAATGGAAATGGCATGGAGACAATTGCTACCAGTTCTATAAAGACAGCAAAAGTTGGGAGGACTGTAAATATTTCTGCCTTAGTGAAAACTCTACCATGCTGAAGATAAACAAACAAGAAGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150048-CLEC1A:NM_016511:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PD(39.4=71.7),PF083915=Ly49=FE(48.4=100),PF041569=IncA=FE(66.3=100),PF039189=CcmH=FE(72.0=100)
A:
NA
C2:
PF083915=Ly49=PD(27.9=66.7),PF041569=IncA=PD(1.1=2.0),PF039189=CcmH=PD(2.4=3.9),PF0005916=Lectin_C=PU(25.5=52.9)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)