HsaINT0036272 @ hg38
Intron Retention
Gene
ENSG00000258227 | CLEC5A
Description
C-type lectin domain family 5 member A [Source:HGNC Symbol;Acc:HGNC:2054]
Coordinates
chr7:141927357-141931826:-
Coord C1 exon
chr7:141931720-141931826
Coord A exon
chr7:141930219-141931719
Coord C2 exon
chr7:141927357-141930218
Length
1501 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
TGTTTTGTTTTCTCATTTAGTGT
3' ss Score
10.07
Exon sequences
Seq C1 exon
AAGTTTCTTCAGGACATAACTGATGCTGAGAAGTATTTTATTGGCTTAATTTACCATCGTGAAGAGAAAAGGTGGCGTTGGATCAACAACTCTGTGTTCAATGGCAA
Seq A exon
GTACGTGAACATGCCACAGTTTCCTGGGGATCTTGGTTTGCTTCAAAAGACCAAACCTGAGATTGCTGGGTTCACCCTGGAATAGCTCAAACGCTGACACTTGACTCTGTTCTGCTCTTCTCCTTTCTTCCAACCCATCTATTCCCTGAGACACATTTTAATAAATGTTTTCTTATGAAAGAGATCAAACTTTCATAAGGAGAAAGAAGAGTATTCATATAGCAAATTATTTTATTCATATCAAGATCCAAACAAATCCACCTACATAGCATTCATTTGATGTATCTTGTAGCTCTCTATAGATGCTAGTTTCCATAGCACTGAGCATTTCTGACTGATCAAAAAAGCTCAGTCTCTTGACTTCAAACAGACTAGATATGAGTCTAGACTGGATGCTAGCCATCTCTAGGAGACAGGGTCAGTTTTATGGAGGCAACCCAGTTGGTATAGAGATGAGATCTATTTCTATAACACTAGTGTTTCTGACTGATCAAAAGGGCTTCGTCTTTTAACCCACAGATCACATTTTATTACAAAGTACATACAAGTTTCCCCAGATATGCCTTCTTTATCTAAGAAAGGTTATTATAAGCAACTTGTCTATGTCTTAAAGCTATGAACTTCTGACCCCCAAGAGCTGTCTCCTGTGAATTGTTCCATGGAGATGAGGATTGGTGAGAACATCAATAATCTTCCCAGTGTTTATACAAAAATAGTGATTCAGACAGAGGTCAAGTCAGTCCCCCAGCCTGTAACTGGGCTTCCCTACAGAGAGGAGGAAATTGACATTTATTCAGTGTCTGCTAATGCCAGCACTATGCTAAACACTTTGCATATGTTGTTTCCTGAAATATTCCCCATGATGCTACATGAAAAGCTTTTATCGCTCCCCATTTCACAGACAGTTGAACTGAGGACAAGTAAAGCTTAGAAATGTGTTAAATATCATAAAGCTAGTCCCAAACACATGACATTTCTCCGAAACCAGAGCCTTTTCAGTCAGACTGAAACAGACTGAATGACAGAAAAAGAGGTGGGAGAGCCAACAAATACCTCCACCAAGTTTTTCTGAGGCCACTATGGTCTGGAAAGGGATGCACAACCTCTCTCCTTTTCCTTCCTGTCCTCTTGCTGTGAACATGCATGCTATCCTAAACAGTACTTTTGGAAGAAGAGACAGCCCATGAGATGCTTCTAACCAAATGCCAGAGTGAGTTAGTTAGTCCAAGACTGTGAATCCATACACGCTCACAGGAGAGCTGACAGGAAAGGGTGGGTTTAGAGCTGCATTTGCGGAGCTGGATTAGGAAAAGGATCTGAGCTAAAAAGGAGGCTACGCAGATGGAGACGTGTGTGGGCCCGGTAGTCTGCTGCCCTTCCAGGCAAAACTCCTGCAAGACTCTCACTCTGGAATCAGGAAGAGGCTGGGCTAAAATGATGGGCCATCACCATGCTTTGTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTCTCATTTAG
Seq C2 exon
TGTTACCAATCAGAATCAGAATTTCAACTGTGCGACCATTGGCCTAACAAAGACATTTGATGCTGCATCATGTGACATCAGCTACCGCAGGATCTGTGAGAAGAATGCCAAATGATCACAGTTCCCTGTGACAAGAACTATACTTGCAACTCTTTTTGAATCCATACAGGTCGTCTGGCCAATGATTCTTTTACTTACCTATCTGTCTACCAGTAGCGGTCCTTGCCCATTTGGGAAACTGAGCTTCTTTCTTCTGCACTGGGGGACTGGATGCTAGCCATCTCCAGGAGACAGGATCAGTTTTACGGAAACAACTCAGTTAGTATAGAGATGAGGTCCGCTTCTGTAGTACTGAGCATTTCTGACTGATCAAAAAGGCCTAGTCTGTTGACAGGGTTTGTTTTATTTTAGCCTCAGAGTATACCATACTACTAGGGAGTAACTGTAGAGTGAGAAATTATAAACATTATTTAGGGATTACCATGGTGGAAGAGGGATAAACATAGGTCCTGTGACTTCGTCTCTGTTCTCAAGGGAACCCCATTCACATGCCCCTCCTAACTCCACAAGCGAGGGTAGCAGAGGCTCTCCTCAGTCTGAACTAAGGCTTGGCCTTGGGGAGGGCTCCTAGTGCTGAGCTTGGAGCAGCACGGACAGCAGCATTGTTTATGGGAATGGAGAGAGGTCTGGGCAGGATAGGAACCTTCTTGGAGACCCCTTTGAAGAAAACCAGGCAGCCAAGGGAGCCAAACACACTAGATTTCTGTTCTTCAGCAAAGCCCTGAAGAGACACTTAAGCTAAAAATTCCCTTGTCATATTTCTGAAACTCCATTATAACATATGTAACTCCTTTGTAACCAAAATTTAGGTAAGCAGGCTTCCTTTGCTCTGAAGGTTTTGAGTACCTGGCTGTATTTGTTGAGTATTTTTAAAATTTTGGATAGTCTCTTAGGCAACAATAATCACAATATATTCATCCCTTCAGTTCTGGAGAAAGCCTGATACCAGGCACAGCCTACTGACCCCAAGGAGCCTGGCACTGATTGGCATCACATTGATCTAGAACTGGTCCAGCCGACGAAGAGTAGGAAAAGAGAAGGGCTGCTCAGGGAAACATTGGCTGGGGGCACGGAATAAGCACATAGTAAAAAGGGAACATCAGGGTCAAATGGAAATCACCTGAGACAGGAAACAGGGAGTTCATTTGGCCACACTGGAAGAAAGGCAAGAAAGAGGAAGACAAGTCTTGGAGTACCCTGGCTGTTCTCCACACTCACAAGACATCAGCTATATACTCTGCTTGGTGCATAAGAAAGAGAAAAGAGATGCCTTTTGTGTTTTGAGTAAGAATAATTAAACCATAAGGAAGACCATGTATAAAACTGATGGAAATAATAGTCACCAAAGTACAGCACATACCATTTTGTGTCTAATAACAATGTAGCACAGTAATGACTGTACATGTCATTGTATGTATACCAAACAAGATTGTTGTAAATCATATTTTTTATTACAACACTAAGTTCTGCTTCTGCATTCCTAGGTTTCATCATTTTTGGCTCCTTAGCATGGCCACTTACAATTTTTTAACATGAGATAACACATCAGGTGTCAGAACTTGCTTGAAGGGAATTACCAGAAGTAATTTGTGTTTGAGATGGGGTGGAAATTGGAATTATATTAGTAGCCGGTGGAGATACAAGTTCTCTGACTGTGTTGGGAAAGGATAAGTGCTACCGTTGAGAAGGGAAGAAAGGCTGAGTCTAGGTGGAGAAAAATATCAACAGAACTCTAGCCAAAGGCAAGCCCCAGAACTCAGACAACAGAAAGGAAATCCTAATCCTTCTGTTTTGAGAAGAGAGAACTGTAGTTGCTTCACTTCCTATTTCATGACAGAATAACTGCAAACTTTTAAGATCAGGAAATGTAGACATCTAGTGATTTCTTTAGTAGACAGTTTAATTTCCCCCAAGATTAGGAGACACTTCTGTGCAGGTTCTAAAAGGAGCCCAATGGCCTGGGGTGGGAGTGGGGAGTAGATAGGGAATATGTGGGATTTGGTTTAAGTTCATCATTGGAAGAGTTCCTGGATCCTTGCAAGCTTAGATAAATGTGATCTTTATTAGATAGCAGTGGCATGCTTTAAAAAAAAAAAAGGCAATGAAAATTTAGCAAGCCACTGAATTTGAGTTTTCACTTTGTTTCTAATATGCTGTGTGAATCAGTACAGTTTTCTTACCCTTTCTTGGTCTTAATTTCCTTACTGATAAAATGGGGTAGTAATACCTATCTCAAAAAATTATTGCACATATTAAATAACATTCCTCTATGTATCTCAATGGCATTAGACATTAGGAGAAGCATTTTGTGGAGGATTTGAAGTTGAGATCTTCATCCAAGAAGTAGCTTTTCAATTTGCTAGAAGCTTAATGTAGGCAAGCCACTTCATTTTTCAGAACTTGTTTACTCATTTATAATATGGGAATAAAAATTTGTGCAAGTCAGAGAAGGGTGCCTTAAAAATGTTGTGGCCAAGCCACATGAGATCAAAGACACACTTTTCATGACCTCAAATGTGGGCCCAGCCTAGGTCAGCCAACCCCCATCCAACCCTTAGACTCACGAACAAATCCACCTGAGATCAGCAGAGCCACCCTAGATCAGCTGAAACTCTAAGCACAAAAATAAAAACTTATCACTGTATACCACTGGAGTTTTCTGGTTATCTCTCGTATAGCAAAATCTAACTGATGCAATCTCCATCTGGCCTTCATCCTTCTCCCTTTATTGTCCTTTCGTGTATTGTTCATCCAGCAACCAGGATGATCTTGTTAAAACATTAAACAGATTCTGTCACTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000258227:ENST00000546910:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(43.2=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(34.7=87.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAAGAGAAAAGGTGGCG
R:
GTCTCCTGGAGATGGCTAGCA
Band lengths:
343-1844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development