HsaINT0036464 @ hg38
Intron Retention
Gene
ENSG00000113240 | CLK4
Description
CDC like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr5:178613727-178616948:-
Coord C1 exon
chr5:178616882-178616948
Coord A exon
chr5:178613844-178616881
Coord C2 exon
chr5:178613727-178613843
Length
3038 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATCTTAATTTTATTTTTAAGGGA
3' ss Score
9.29
Exon sequences
Seq C1 exon
ATGAAATCGTGGACACTTTGGGTGAAGGAGCCTTTGGCAAAGTTGTAGAGTGCATTGATCATGGCAT
Seq A exon
GTAAGTTTGTTTTTTCCTTTTCAAACATTCTGATGTTTTTGGTGGGGAAAGATTCATAATTCAGATGAAATTTTATTTATTTATTTATTTGAGATAGGGCCTCTGTTGCCCAGGCTTGAGTGCAGTGGTGCTATCTTGGCTCACTGCAACTGCCGCCTCCCGGCTTCAAGTGATTCTCCTGCTTCAGCCTCTCAAGTAGCTGGGATTACAGGAGCCTGCCACCACACCTAGCTAGTTTTTGTATTTTTAATAGAGATGGGGTTTCACCGTGTTGGCCTGGGTGGTCTCGAACTCCTGACCTCAAGTGATCTACCCGCCTCAGTTTCCCAAAACGTTGGGATTACAAGCCTGAGCCCCTGTGCCCGGCCAAGATGGAATATATTTTAAATGGTAGCCACGTGTTTTGGGGGGTAAATTACTCACCAAAGTTTCTTGAACTTTGTATGATTTATTTACCGTGAATGTGGATCTTAAGAATGCTGACTGCCGGGCACAGTGGCTCACTCCTGTAATCGCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTTGGGAGTTCAAGACTAGCCTGACCAACATGGAGAAATACATTCTCTACTAAAAATACAAAATTAGCCAGGTGTGGTGGCACATGCCTGTAATCCCAGTTGCTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGGGAGGAAGGCGGAGGTTGCGGTGAGCCAAGATTGTGCCATTGCACTCCAGCCTAGGCAACGAGTGAAAATCCGTCTCAAAAAAAATAAAAATAAAAAAAAAGAATGATGACAAATTTCAACAGGGGGAAATCATTGAAATTAAAGTGGATGTTCAAGTGAAGGAATTTCCCAGAACTCCAGAACTGAGGCCCTTGACCCTGTATATAAGATTTGGCAATTTCGGATTACAGAGGCAATAAAGCATGTCTAATCTTAAATGTTAAGAGTTAGCTTCCTAAACTATAAAGACATTTTATTATCTAGGGCCTAGAGAATAAAGTTTGTGATTTGACCCTTTCTGCCTCATTTTACCGTTTTCCTCTAGGACCTCTATTTTGTGGCTTGAAAACTTTTGTAAGAGAAGCTCTTAGAACTTTTGCGAAACTTCACATTTCTAAAATGACAAAATTTTTTATCATAAATTATTTGGGAAGGATGTAATTTCCAACCTGTTGTAAATATTAATATTAAAAAATAAAACTTACCTCTCTCTAAATGCATTTCAGGGAATCTAAATACCATAGCAGCTTGATACCTACCATCATCCATAAACAAACTCTTCTTGAATACTTAGAAATGTTTTATTATTGAATTTATTGTCATTTCACTTTCCATAAATACTATCCTAAATTATCCCCACATTTTGCTTTTCTGCAACAAATATGTGAATGTAAATTGAACTTTAAAGTATTTTGAAATATTTTCAGACTTACAGAAAAATTGATAAAATAGTTCAAAGAATTCCCATATATTCCAAATGTTAACCTATTTTCCAAATGTTTACATTTTATAAGATTTGCTTTATCATTATACATACATTTGTTTTCAAATTTTGCCAACTAATCTGCAGACTTTATTCAGATTTCACCAGTCATCCCATTAATGTCCTTTTAGAATTTCTTGAAAGTCTAAGTCTTGGTGTATTTAATGAAATGTATCTTAAAAAAAATTTTTTTTTAATGAGATGGAGTCTCACTGTGTTGCTCTGGCTGGTGTGGAACTCCTGGCCTCAAGTGATCCTTCTGCCTCAGCCTCCCATAGTGCTGGGATTACAGGTGTGAGCCTGTAGTCACGTGTGGCACACACCTGTACCACATCTGGCCTGGAATGTTTCCTTTATTGGGGCAGTTGAGGCCTCTAAAAAAATGAGTACATATAGCCATAGATAAATATCTGACTGTCTAGCATTGTATGTTTTCTTTTTTCATTTTCGTGGATACAAGCACTGAGAAAACTTTTTGGTCATATAATTAAATAGATAGGAGTAGAAGCTTTGTCACAGTAATCTTATTAGAGTTCTTTTAAGTCTTGAGGTATATGCCAAGCATTAAAAAATTTTTTTAGTGACTTATCAGTTCACATTCGTTGGGGCCTTGTTGAAAGCAATGAACTGGAAACCACTGGATGTGGAAAAAGGTTTTGTATCCAGCCATTAGAATACGTGTTTGTTTGCCCCAAATGTTTTTATAGCCTAGGGCATACATCCTGTTACACTAGTAAGAGATGGGTATGGTTTTGTAAAGTGGAAGGGTCATAGTGAAAAAGAAGGCTTGAATGCTGGCTCATCTGTAGGTAGATTAGGTTTAAAAAGGAAGACAAAAATAAATTGAAGATTTGCAACATTTATGGCTCTATACTTTTTAGGAAGCATTCTTACAGATGCCGCAGTCTAAAGCCCACTGCCCTCCCCTGTAGCTGTTTCTGTATACTGGCATCAGTGCATCTGCTAAGGTTTTTCTGGGCTTCATTACTTAGAGTTGGGGTCTCCTTTACCTGGATGTTTCCTTCCCAATCTGACAAACTCCCAGCTATCTTTCAGGACTCAGTTCTGTGTCACCTCTTCTGTGAAGAAGTCTAAGTTGTTTCTGTGTCTGTCTTTTCCATTAGACTTTGAAGTACGTAGGGACACACCCCGTCTTTTAATCACTAATATCTGTGCATTGCCTGGCACAGAGTAGGCCTAGCCTGGTAAATGAATGAATGCTTTCAACAGTAGCATATCCTATTTTTGGTTTACATTTGTATATATCTTTTAAAACTGTTGTTGTATAAAATGTAATTAAATTTAAAATTCTAGGAGCAAACGTTAAAACTCATAAGTATTAAGGGAATTATCACTTCATATAAAGTATTTTATCAAAATGTTTTAAGAAGATGTTATATGGAATCTGCTATAATATGTTCTGAAAGATTATTTTAAATGGCATAGAGGAATTGGTAATTAAGACTATGCTTTAGAGCATAACATGGCTTCAGCTCACTCTTGTACATTTATCATTTTTATCTTAATTTTATTTTTAAG
Seq C2 exon
GGATGGCATGCATGTAGCAGTGAAAATCGTAAAAAATGTAGGCCGTTACCGTGAAGCAGCTCGTTCAGAAATCCAAGTATTAGAGCACTTAAATAGTACTGATCCCAATAGTGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240:ENST00000316308:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(14.8=95.7)
A:
NA
C2:
PF0006920=Pkinase=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development