HsaINT0040553 @ hg19
Intron Retention
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:23228]
Coordinates
chr19:17003762-17007137:-
Coord C1 exon
chr19:17006987-17007137
Coord A exon
chr19:17004151-17006986
Coord C2 exon
chr19:17003762-17004150
Length
2836 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AGATAAAACCTCATCTCCAGGGT
3' ss Score
3.74
Exon sequences
Seq C1 exon
AGCAGCGGCTGCCGGCCTCGTCGTCCTCCACCTACGGGGATGACCTGGCTTCTGTGGCCCCGGGGCCTTTACAGCAGGACGTGAAGCTGAATGGAGCCGGCCTTGAGGTGGAGGACTCAGACCCTGAGCCTGAAGGGGAGGCGGAGGACAG
Seq A exon
GTAACAGCTGGGCCCACCCCAGAGATAAGAGACATAGGCTCAATATCTCCCCACCTCCCTCCCCTACCAACCTCCCCCGACGACCTGCCCCGACTCCTCCGCCCCGCCCCGACCCCCCACTGGCAGTGGGAGTGACTCAGGGTCAGAGGCTCAGAGTTCCTGGGGACAAAGTGGGACATTCATCCTCCCTCCACCCTGGCCCACGCAACACCCACCAGCGAACAGCTGTGCGCGGGCGCACGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGCGCGCGCATACGGGTCAAGGATCCCTTATCCGAAATGCTGGGGGGACCAGCAGTGTTTCGGATTTCAGATTTTTTCACATTTCAGAATGCTTGCATTATATAGTTAGCTAAGGTTCAGCATCCCTAATCTAAAAATCTGAAATGCCCCAATGAGCATTGCCTTTGAGCACGTCAAGTCGCTGCTCAAAAAGACTTGGATTTTGGAACATTTCAGATTTAGGATTTTTGGACTAGGGAAGTTTTGCCTGTAGTTAACAGTGTGCGGTTTCCTCATGGGCAGATTTGTGTAATCTCAACCATAGTCAACAAACAGCCCATCTGCACAGGATCCTTCCAGCTGCTCTTCCATAACTTCATCTCTCCCCTCAACACCTGCAACCACTAAGCCATTTTCCCCCTACCCGTCTGTAATTTTGTTATTTTGAGAATGCCAGGTAAATGGAATCAGAGCGGATAATCTTTGGAGCATGATTCCCTTGCATTCACCTGTGTTGTTTCGTGTATCCATAGTTTATTCTTTTTTTAATCTGGGCTCACTGCAATCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCCCAGAAGCTGGGATTACAGGGGCCCGCCACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCTTGACCTCAGGTGATCCACCCGCGTTGGCCTCCCAAAGCGCTGGTATTGCAGGCATGAGCCACCATGCCAGGCCTATTCTTTTATTTTTCAAACGAGGTCTCACTGTGTTGCCCAGGCTGGAGTGTAGTGGCGTGGTCATGGCTCACTGCAGCCTTGACCTCCTGAGCTCAAGTGATCCTCTTGCCTCAGCCTCCTGAGTAGCTGGGACCACAGGCACACACTACCACCACGCCCAGCTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGAGATGGGGTCTCTGTATGTTGCCCAAGCTGGAGTGCCATGGCTGTTCATAGACATGATCATTGTGCACTGCAGCCTCAAATTCCTGGGCTCAAGTGATCCTCCCATCTCAGTCTCCCAAAGCTTTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCTGGAGTTTGTTCTTTTGTATTGCTGGGTAGTGTGCTATGGGTAGCTTTTCGATTTGGTTGGTGGTCTGACACAAGCTACTCCCCTCTTACCGCACATGGACACCCAGAGCCCATCACTGTGGTCCACTGGAAGGGGAAAGGAGGCAGAGTTGTACAGTGCCAGGCCTGGGCCATGTGTCCCCCATCCAGTTGGGGTTCTGCCATCTAAATGAGGAGGTGGCAGCTGGCCTGAGCCCCGTGGAGTTGGGTTCAGGAAAGGGGTGTGGGGTCCCATCCCGAAGTCCTGGCGGCCCCATAGGAATCTTTCTCCTCTCCTGGCCAGTCAGAGCGGCTTCTCTTCCTAACGGCTGCCCTGCTGAGAGCAGGACGACACCATCTGGCTGCATCCTGTCCCTATCAGCCTGTGACTCTGTATGGTGGGTGGGCAGACCTCAGCCCAGGTGACACCTGCCTCTAAATGAACCCAAGGAACAGAATGACAGAGATCTGCCCGTCCCTAGGATGAGACTCTTGGGACCCAGGTGTGGGCTCAGCAGTCACCGGTGTGGTGCAGGGGGGACAGCTGGAGGTCCCTTGGGAGATCCCCCACCTTCCTAGCTACAGCTGGAGCTCCAAGCACCCCAACCCCCCAGCCTTGGAGCTGGGCATCATTTTCCTGGGGCCACGGCAGCTCCCACAGCCTGACATTCTGTTCCCGGGAGAAGAAACATTCCCAGAAAGCACTCGTGTGGCCAAAAGCCTCTTTCTGAGCAAACACGATGTGGACTAAATTAGCAAAACATCCAGCCGGTGGGCAACTTCAAAACGGAACAGGCTGCGTTTCTCTGAAACACAAAGCCCCGGCCTCCCTTTGGGGCACCCAGGACCCCAAATTGCCCTAAGACTGTCCCAGCTCTCGCACCCTCTGCCTTCGCCCCCCGGGGACCTCGGGCTCACATCACAAGGCCCTGCGGGGAAGCAGATGGCTCTCAGCAAATGCACTTTCAGCTTCCGGCTGCCGGGGCTGGGTGACCCCGGTGCTTCCTCACCGTGAGTTCCTGATGTCCTCGTGCCCAGAGGACCAGCCCACTCCCAGGGCCCCCAGGCCCAGAACCTGCCTGCCTTGGGGGGCCCTACCAGCTGCCTGCCACCAGTACCAGCAGACTTTGATTCCCCTTTGTGACCCCTGGCACCTGCTTATGTCTGCATTTGCCCATCTTCTCCGGGGTGGTATTTATTTCAGCCAACACCGCTCAGCCCTGATCTCTGCCAGCACGGAGGCCCCTCGCTGCCTGTGAGATCAAGGTCTGAGGCTGCCCTGGCCGGTGGGTTCCCCACCCCTGGCACCCTACAAGCGACAGGCCCTGTGGCTCCTTCCTCAGCCCGAGGCCCCGTGCCCACTTGCTGTAGAGGATGTTGTAAGATAAAACCTCATCTCCAG
Seq C2 exon
GGTCACAGCCGGGCCTCGGCCTCCTGTGAGCAGCGGGAACCTGGAAAGCAGCACCCAGAGCGCCAGCCCGTTCCACAGATGGGGCCAGACTCCGGCCCCTCAGAGACATAGTGGCCGGGTGGTGGGGGCCCACAGGCCAGGGCTTCTGAGCCCTGTCTTCGTCTACAGCCCAGCCTTTCAGAGTGGTGGGGAGGAGGGTTTATGGATGTCAAACACCTGCACCTTGAGATAATCCTACAACCACATGCAGTTGTGGGACCGCAGTTTGGTCCTGGGGACCATTCATACCCACACACCCAGCTTGTGCCTGTGGTTAACATCTCAGAAAACTCTGGTAAATGATCACTCCAGGATATTGACAAGAATACACGTTACTGATCTTACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111-CPAMD8:NM_015692:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)