HsaINT0041165 @ hg38
Intron Retention
Gene
ENSG00000117322 | CR2
Description
complement C3d receptor 2 [Source:HGNC Symbol;Acc:HGNC:2336]
Coordinates
chr1:207474241-207475216:+
Coord C1 exon
chr1:207474241-207474323
Coord A exon
chr1:207474324-207474823
Coord C2 exon
chr1:207474824-207475216
Length
500 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCCCTAAATCTCTTCTGCAGTTA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTACCAGTTGACTGGACATGCTTATCAGATGTGTCAAGATGCTGAAAATGGAATTTGGTTCAAAAAGATTCCACTTTGTAAAG
Seq A exon
GTAAGTTAGAAAAAATAAAAGCCTGACAATGGTAATGGAGGATTAGAGAGGGCAGGCCACTGAAGAATTAGTCTACTGCTGCTTCAGCAGTCTTAGGCGTCTCCCTCATTGGAGGTTAGATAAGAAAAATCTTATGGTGTTGGTCAGTATTGACACTGAGAAACAACATTGTCAAGTAGGAACTGTTTTTCATGCATCTGCTAATTTTGCTAACAATAACAAAATATATAGCCCATATTCCTAGGTCATGGGAACATAGCTGTATTTCTTTCTTCCTTCACACTTTACTCTATTTTCTGAATTTTTATGGAGTATATAGTACTCCTATAATCACATTTAATAAAGCTGTTTTTAAAAAAAGCATAATCCATATTCCAAAATTTAAGTTATTTTCTAGTTATGTGAAATATATGCAGTTGCATATTGTCATTTGTACCTGAATGAAGACCGCTCACCTTGAGGTACTAGCTGAAGTAGAACTCCCTAAATCTCTTCTGCAG
Seq C2 exon
TTATTCACTGTCACCCTCCACCAGTGATTGTCAATGGGAAGCACACAGGCATGATGGCAGAAAACTTTCTATATGGAAATGAAGTCTCTTATGAATGTGACCAAGGATTCTATCTCCTGGGAGAGAAAAAATTGCAGTGCAGAAGTGATTCTAAAGGACATGGATCTTGGAGCGGGCCTTCCCCACAGTGCTTACGATCTCCTCCTGTGACTCGCTGCCCTAATCCAGAAGTCAAACATGGGTACAAGCTCAATAAAACACATTCTGCATATTCCCACAATGACATAGTGTATGTTGACTGCAATCCTGGCTTCATCATGAATGGTAGTCGCGTGATTAGGTGTCATACTGATAACACATGGGTGCCAGGTGTGCCAACTTGTATCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117322:ENST00000367058:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(61.9=89.7)
A:
NA
C2:
PF0008415=Sushi=WD(100=46.2),PF0008415=Sushi=WD(100=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAAATGGAATTTGGTTCA
R:
AAGCCAGGATTGCAGTCAACA
Band lengths:
357-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development