HsaINT0043013 @ hg19
Intron Retention
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:2523]
Coordinates
chr1:15771101-15772244:+
Coord C1 exon
chr1:15771101-15771246
Coord A exon
chr1:15771247-15772091
Coord C2 exon
chr1:15772092-15772244
Length
845 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
GCCCTCCCGGTCTGGTGCAGGGG
3' ss Score
7.62
Exon sequences
Seq C1 exon
CCAACGGCCCCATTGCTGATAAGCTGCAGCAGGGCCTGCAGCCCGTGGTGGATCACGCCACGTGCTCCAGGATTGACTGGTGGGGCTTCAGGGTGAAGAAAACCATGGTGTGCGCTGGGGGCGATGGCGTCATCTCAGCCTGCAAT
Seq A exon
GTGAGTGGCTAGGTTCTGCACCTTGTCCCTACTCCAAGTGGCCAAGTGGATGTGGGCAAAGGGGGGTGCGATGGACCAAACCCTTCTCCTGGGAGGAGACTGAGCGAGCCCTGGCTGGGCCCAGCAGGCTCAGGGTAAGCCCATCACCCCCCATCACTGTGGTGAGAGCATGAGCATTGAGCACGAGTATCTGAGTTCAAGCCCCAGTCCCACCATTTATGAGCTACGTAAACTTGGGAGGGCCGTTGAACCTCTGACCTCAGTTTTTCCATCTGTAAAATGGAGTTACAGTAACCACTTCACAGGGTTAGGACTAAATGAGTTTAAAGGACAGAGAAGAGGCTTCACTGAAGTCTCTACACATGTTCCTCCATGCATTTGCTCCACCAGTCCAGGGAGACCAGAACCATAAAACATCTAAGACAATCAGGGAATGTCCTGTTTTCAAACACACAACCCTCTCCCCATTCTCACCCTCCTTCCTCACCTTCCCAGGCCTCTAGCACAGCTGCCTGCATCCTCACTGCTCTGAGTAGCTCACAGAGTCTTAGATAAGGAGACCTGAACAGCTAGGGAAACTGAGGCACGGAGAGGATTAACATCATCCCAAGATCACACAGCAAACCAAGAGCTAGTCTGACACCCCAGGGCCTCCCAGAATAAGGCCAAGGCAGCCGCAAACCACATTTCCTCTGCCTCCCTCACCATGGGCAGGCTGAGGCCAAATCTGTCCACTAACTAAGGCTGAGAAGCCAACCCACATCCCCCACCCCAACCCAGTCCTGCTTCCCAAGACTTCCTCTGGGGGGGGGCCTGGTGGCTTATGCCCTCCCGGTCTGGTGCAG
Seq C2 exon
GGGGACTCCGGTGGCCCACTGAACTGCCAGTTGGAGAACGGTTCCTGGGAGGTGTTTGGCATCGTCAGCTTTGGCTCCCGGCGGGGCTGCAACACCCGCAAGAAGCCGGTAGTCTACACCCGGGTGTCCGCCTACATCGACTGGATCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-CTRC:NM_007272:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.6=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCCCCATTGCTGATAAG
R:
GTTGATCCAGTCGATGTAGGCG
Band lengths:
294-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)