HsaINT0044290 @ hg19
Intron Retention
Gene
ENSG00000205702 | CYP2D7P1
Description
cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 [Source:HGNC Symbol;Acc:2624]
Coordinates
chr22:42537544-42538054:-
Coord C1 exon
chr22:42537878-42538054
Coord A exon
chr22:42537686-42537877
Coord C2 exon
chr22:42537544-42537685
Length
192 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATCCTCTCGGCCCTGCTCAGGCC
3' ss Score
5.07
Exon sequences
Seq C1 exon
GTGCTGAATGCTGTCCCCGTCCTCCTGCACATCCCAGCGCTGGCTGGCAAGGTCCTACGCTTCCAAAAGGCTTTCCTGACCCAGCTGGATGAGCTGCTAACTGAGCACAGGATGACCTGGGACCCAGCCCAGCCACCCCGAGACCTGACTGAGGCCTTCCTGGCAAAGAAGGAGAAG
Seq A exon
GTGAGAGTGGCTGCCACGGTGGGGGGCAAGGGTGGTGGGTTGAACGTCCCAGGAGGAATGAGGGGAGGCTGGGCAAAAGGTTGGACCAGTGCATCACCCGGCGAGCCGCATCTGGGCTGACAGGTGCAGAATTGGAGGTCATTTGGGGGCTACCCCGTTCTATCCCCTGAGTATCCTCTCGGCCCTGCTCAG
Seq C2 exon
GCCAAGGGGAGCCCTGAGAGCAGCTTCAATGATGAGAACCTGCGCATAGTGGTGGGTAACCTGTTCCTTGCCGGGATGGTGACCACCTTGACCACGCTGGCCTGGGGCCTCCTGCTCATGATCCTACACCTGGATGTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205702-CYP2D7P1:NR_002570:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGTCCTACGCTTCCAAA
R:
TAGGATCATGAGCAGGAGGCC
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)