HsaINT0044291 @ hg19
Intron Retention
Gene
ENSG00000205702 | CYP2D7P1
Description
cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 [Source:HGNC Symbol;Acc:2624]
Coordinates
chr22:42537162-42537685:-
Coord C1 exon
chr22:42537544-42537685
Coord A exon
chr22:42537350-42537543
Coord C2 exon
chr22:42537162-42537349
Length
194 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
GGGGACGCATGTCTGTCCAGTCC
3' ss Score
2.32
Exon sequences
Seq C1 exon
GCCAAGGGGAGCCCTGAGAGCAGCTTCAATGATGAGAACCTGCGCATAGTGGTGGGTAACCTGTTCCTTGCCGGGATGGTGACCACCTTGACCACGCTGGCCTGGGGCCTCCTGCTCATGATCCTACACCTGGATGTGCAGC
Seq A exon
GTGAGCCCAGCTGGGGCCCAAGGCAGGGACTGAGGGAGGAAGGGTACAGCTGGGGGCCCCTGGGCTTAGCTGGGACACCCGGGGCTTCCAGCACAGGCGTGGCCAGGCTCCTGTAAGCCTAACTTCCTCCAACACAGGACGAAGGAGAGTGTCCCCTGGGTGCTGACCCATTGTGGGGACGCATGTCTGTCCAG
Seq C2 exon
TCCGTGTCCAACAGGAGATCGACGACGTGATAGGGCAGGTGCGGCGACCAGAGATGGGTGACCAGGCTCACATGCCCTACACCACTGCCGTGATTCACGAGGTGCAGCGCTTTGGGGACATCATCCCCCTGAGTGTGACCCATATGACATCCCATGACATCGAAGTACAGGGCTTCCGCATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205702-CYP2D7P1:NR_002570:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006717=p450=PU(29.7=97.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCTGCGCATAGTGGTG
R:
ATATGGGTCACACTCAGGGGG
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)