HsaINT0044305 @ hg19
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:2632]
Coordinates
chr19:41626252-41627523:+
Coord C1 exon
chr19:41626252-41626401
Coord A exon
chr19:41626402-41627362
Coord C2 exon
chr19:41627363-41627523
Length
961 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
ATTGCACTCCTTACCCTCAGGCG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GCATCGCCTTCTCCAGTGGGGATCGATGGAAGGTCCTGAGACAGTTCTCTATCCAGATTCTACGGAATTTCGGGATGGGGAAGAGAAGCATTGAGGAGCGAATCCTAGAGGAGGGCAGCTTCCTGCTGGCGGAGCTGCGGAAAACTGAAG
Seq A exon
GTCAGGAATTTTTTTTAACAGGCTGGATGGCACGATCTTTTTTTTTTTTAACAGGCTGGATGGCAGCCTTGACCTCCTGGGCCCAAACCATCCTCCCACCTCAACCTCCCGAATAGCTGGTACTTCAGGTGTGCTCCACCACACCCAGCTTATTTTTAAATTTTTTGTAGAGACAGGGTCTCACTATGTTGCCCAGGCCAGTCTCAAACTCCTGTGTGCAAATGATCCTCTTGCCTCTGCCTCCCAGAGTGCTGGAACTATAGGCATACACCACCATGTCTGGCCAGGTCTTTGAATCCAGTTCATCCTTATAATTCACATCCATTCTACTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCCCCCAGGCTGGAGTGCAATGGTGTGATCTCAGCTCATTGCAACCTCCGCCTCCTGAGTTCAAGCGATTCTGCTTGCTGACTGCTCTGTCGCCCAGGCTGGGTTGCTGTGTACTAGCGTGTGTTGTGTGGCAGGATTATGTAGCTGTATGCTGGCTTTATGTGTTGGTGTGTGGTTACCGTGTCTTGGGATGTTTCCGGGCTGGCTGTTAGGTCACTGCGTGTCGTGTGTTGGCATGTACTGTGATCGTATTTGCTGGGTGTTCTGTTGCCCTGTGTTGTTGTGTTCCGTGATGCCTGATGATTGCCTTGTGCTATGTCGCGTGCTGTGTGTTGTGTTGCCAAGAATAGCCCGTTCTGTGGTTGGGCGTTGTTGCTGTCGATGTGCTGCAGGAAGTTGTGGGTTCGGTGCCGTCTGTGGCATTGACAGATGCTTTTGGGGTGTCGTTAAGCAGCATGTTGTGACCATGTCCCCGTGTTTGCACCGTAAGACACGTTGCCATGGTTGAGTCGGATGTTGTACAAATTAATGGTGTTGCTGCATGAGGTCTGGTGTGCTGCACATCGCGTCTTCCTGATCCATTGCACTCCTTACCCTCAG
Seq C2 exon
GCGAGCCCTTTGACCCCACGTTTGTGCTGAGTCGCTCAGTGTCCAACATTATCTGTTCCGTGCTCTTCGGCAGCCGCTTCGACTATGATGATGAGCGTCTGCTCACCATTATCCGCCTTATCAATGACAACTTCCAAATCATGAGCAGCCCCTGGGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446-CYP2F1:NM_000774:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCCTTCTCCAGTGG
R:
GGGGCTGCTCATGATTTGGAA
Band lengths:
302-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)