HsaINT0044465 @ hg19
Intron Retention
Gene
ENSG00000186204 | CYP4F12
Description
cytochrome P450, family 4, subfamily F, polypeptide 12 [Source:HGNC Symbol;Acc:18857]
Coordinates
chr19:15806746-15807035:+
Coord C1 exon
chr19:15806746-15806879
Coord A exon
chr19:15806880-15806970
Coord C2 exon
chr19:15806971-15807035
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
TGCCCCTTTCTCTCCCACAGGCA
3' ss Score
13.46
Exon sequences
Seq C1 exon
GGACGACCTGGCCCAGCTGCCCTTCCTGACCATGTGCGTGAAGGAGAGCCTGAGGTTACATCCCCCAGCTCCCTTCATCTCCCGATGCTGCACCCAGGACATTGTTCTCCCAGATGGCCGAGTCATCCCCAAAG
Seq A exon
GTGCCCACAGCCTCAGGGGGAGAAGCCTCCCGGGTAGGAAGATGGTTCCCTCAGGGGATCCTTGTCCTGACTGCCCCTTTCTCTCCCACAG
Seq C2 exon
GCATTACCTGCCTCATCGATATTATAGGGGTCCATCACAACCCAACTGTGTGGCCGGATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186204-CYP4F12:NM_023944:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGACCATGTGCGTGAA
R:
GCCACACAGTTGGGTTGTGAT
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)