HsaINT0044510 @ hg19
Intron Retention
Gene
ENSG00000228314 | CYP4F3
Description
cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene [Source:HGNC Symbol;Acc:2647]
Coordinates
chr19:15751707-15752423:+
Coord C1 exon
chr19:15751707-15751755
Coord A exon
chr19:15751756-15752224
Coord C2 exon
chr19:15752225-15752423
Length
469 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
CCACCCCATCTGCCCTGCAGGAT
3' ss Score
9.56
Exon sequences
Seq C1 exon
AGAAGAAGGGGAGAGGAGGTTGTGTGGGACAAGGTGCTCCTGACAGAAG
Seq A exon
GTGCCAGGGTGGGGGTGGTGGGCCTGGGGCATCCTAGCCTGTGATGGAGATGGGCACTGGGCAAGGGATTGGGCGCACACATAGGGGAGCCCCAGCCTTCCCACATTCTCCATTGCTGCCCAAGGCCCAGGCAGCTCCTGGTTGCTGGCTTGGAGGATGAGTGGTTTTCTAACTGAAACCAAGCCCCTGGCAACGTCCTAATGATTCAGGCTGGGCCTTTCTGGACTTTAATCAGTTTCTCTGTCTTTCTCAATCTAAGTGCTTACCGGGTAACTGGAGGCCACTTGGTTGCTGGTTTTGGCTGGGCCTTTCTGGACTTTACCCCTCAGCCCCTGTTTATCCATCCCTGTTTACTCTTACTGTTCTATCTCCAGCACTGCCCGTCTCTGCCTCTCTCCACTGTCCCTGGAGCTCCCTGGGCCCTTCCCTGGGCCTCAGGACCTCACTCACCACCCCATCTGCCCTGCAG
Seq C2 exon
GATGCCACAGCTGAGCCTGTCCTCGCTGGGCCTTTGGCCAATGGCAGCATCCCCGTGGCTGCTCCTGCTGCTGGTTGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATACCTTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCGAAACGGAATTGGTTCTTGGGTCACCTGGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228314-CYP4F3:NM_000896:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGGGAGAGGAGGTTG
R:
GGCCCAGGTGACCCAAGAA
Band lengths:
246-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)