HsaINT0044530 @ hg38
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15615616-15623375:+
Coord C1 exon
chr19:15615616-15615814
Coord A exon
chr19:15615815-15623104
Coord C2 exon
chr19:15623105-15623375
Length
7290 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCTCTGGACTGGCCCTGCAGGAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GATGTCGCTGCTGAGCCTGTCTTGGCTGGGCCTCAGGCCGGTGGCAGCATCCCCGTGGCTGCTCCTGCTGGTGGTCGGGGCCTCCTGGCTCCTGGCCCGCATCCTGGCCTGGACCTATGCCTTCTATCACAACGGCCGCCGCCTCCGGTGTTTCCCGCAGCCCCGGAAACAGAACTGGTTCTTGGGTCACCTGGGCCTG
Seq A exon
GTGAGTGGCAGGAGGATGGATCTAGTGTCTCAGGGTGGAAGGGTGGAAATGGGGCTCAGGCTGAGGGGGTGGGCTCGGGTCTGGGACGGCAGAGAAACTCACTCATTCCTCTGATCACTCACTCATTCCTCTTCCCACTCATTCCTCTCCTCACTCACTCATTCCTCTCCTCACTCACTCATTCTCCTCACTCACTCATTCCTCTCCTCACTCACTCATTCCTCTGCGCACTCACTCATTCCTCTCCTCACTCACTCATTCCTCTCCTCATTCACTCATTCTCCTCACTCATTCCTCTCCTCACTCACTCATTCCTCTCCTCACTCACTCATTCTCCTCACTCACTCATTCCTCTTCCCACTCACTCATTCCTCTCCTCACTCACTCATTCCTCTCCTCACTCACTCATTCCTCTCCTCACCCACTCATTCCTCTCCTCGCTCACTCATTCCTCTCCTCGCTCACTCATTCCTCTCCTCGCTCACTCATTCCTCTCCTTGCTCACTCATTCCTCTGCTTTGCCATGCCAAGCCTTTCTCATCTCCTTGTCTAGGGGAAGTCACCCCTAGACTGTTTTGAATTCTTTTCCTGACTGTTTTCAGTACACTAGTGAACCTCTGATGGGTTCCTGTGGCAGAGTGGGGGTTACGCAGCAGGTATTCACCATTATTTCCACATTATCCACTGCTGTACTGGAGGCCTCTTGGGCTCACTGTCTAGAACCCACTTTCTGCCTGGCCCATTTGCTTGTGTCCATCCATCTCTGGGCTGGAGTTTTCCCATAGGAAGTAGCTATACACCCCCTACCCTCACATCATGACACAGCTGGGCCAGAAGAGAGATGTGTGCCATCTCCACCCTCCCCCGTGCAGGGGCATCTTCTTTATCCCCACTAAGCTGTCCCAATGAGTTGTGTTGCCCAACCTGGATAAAAATTGGCCAGTGACTTCCTCTTTAAAGTTACCTTTGACCCTTCAGACCCTGCCCTTTCACTTAGACCTGCTGTCCCCTTTGGGCGATTTGGCATCAGTCTGTTCTTTGGCAAATGGCAGGAATGATGGGTGTGTCCACAGGTGCAGGGTGAGGGAACACAGGACGGACTAGCTCTGAGCTTGATGTGCAAAAGGTGCTCCCTGGTGAGAGCCGCTGTTCTTCCTGACAGACAGTTAGAGCCACCTCTTCTCCCCTGGGGGCTGCTGAGAAAGGAAGTTCCACCGTGTACAGACCTTCTCCATGGGAGGGCCTGGGGCCCCTGAGGCCCAGCCAGGACATAAAAGGATGTGGGGACCAGCCCTGGGGACATGTCCTGAGGCCACATTGCTGCCCACACACCACACTTGTGGAGCCCACCCCACGTGACTTTCCGTGGGCTGGAGCCACTCCCAGGATGAGAAAATCCATCCTCTTTATTCAAGGTGGGCTTCTCCATGAACAGACAGTTTGTCTTCCCCCTGTTCCCTGGGATGTAGCCTTGGAAGTTAGATACTGCCCCCAAGAGAAGGGAGCAGGAGGGAGTGGAGATTACCCCTATGTGCGCAGAATCTGGACATGCTGTTCATTGCAGAGGCTGTGCCACCTCTAAAGCCTGCAGTGGGACCTGCTGTGGCTCCTCCTGGGAAATGTATTTATTTCTCCAGAGTAATAGAATTAATAGGATATCAATATCTACATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCAGTCCGTCTGTCTGTCTATGATCTATCTAATCTATGGAGAGACAGAAGAGGGCATTTATTATAGGAATTGACTCATGTTTATGGAAGCTGAAAAGTCCCACTCTATGCCTTCTGCAAGCTGGAGAATCAGGGACACTGGTGGTGCAATTCCGTCTGGGTCCAAAGCCCTGGGAACCTGGAGTTCTAATGTTCAAGGGCAGGAGAAGATGGATGTCTCAGCTGCAGAGGAGAAAACAAATTCACCCTTCCTCCACTTTTACATTCTACGTGGACCCTCAACAGATTGGATGATGCCCACACAGACTGGGAAGGGGAGATCCTCCTTCCTCAGTTTTCCTTCAAATGCTAATCTCTCCTGAAACACTCTCACAGACATACCCAGAAATAATGTTTGACTGGATATCTGGGCATCCCTTAACCCAGTCAAGTGGACACAGGAGGTGATGGCCCTTGCCTTGCTTGCAGGTCACTCCCACAGAGGAGGGCTTGAGGGTCCTGACCCAGCTGGTGGCCACCTACCCCCAGGGCTTTGTGAGGTGGTTGGGCCCCATCACTCCCATCATCAACTTGTGCCACCCTGACATCGTCCGATCTGTCATCAATACCTCAGGTACTCCTGCAGAGCTTGTGGTGGTGGGCACAGGAGAACATTGGAGGGCTTCTAGATCTCATCCCCAAAGCTTCTGTGCAGCTCTTGTAGTACTCAGCCCCTTCCTTCCTGCTTCTCTCTCAGCCACCTTCCTCTTTCCTTCCTGTAGTCACCAACCCCAACCTCAGTGTCTTTTCTCTCTGCTGCCATCTTCCCCACCTCCGTGTTGTTCTGGGAACCACTGGGGCCCCGAGAAGCCTTAATCCAAGGCCCTGTCCTGGAGGAATCCCCAAACTTGAAGAGATGGAGCAGTACAGAGACATCCCCAACTTCATGGGGTTCAGAATGGGCCAGGAGGAGATAGGCTGTGACAGAGCATAGGAGAACAAGGTTTCTACTGGGGCAGGCTGGAAGGCTTCCTGGAGGAGGCGTAGCAGGAGCTGGGTGTGGAACGATGAGTGATAATTTTTTTTTTAAAGCAGGGGCAGGGTGATGCAGTGGGCATTGTTAGTATTCAAGGCTCCGGGCCAGGCTTGGCATTGGCCTTGTCCTTCTGCAGGCCCAGAGCAAGGACAAGAAGATGAGAAGGAGTTGTGGTTGGTGGAAGATCTAGGCTGCTATTTCCATGACATTCACCTCTTGTGGGTCGATTCCTTCTAATCCCATCCTGTGGCACTTCCACCATATGTTCATTGCCCTCTTGCTCCAGGCCCCAGGAATCTCCAATAGGAGACACCACCCCAGCCTGGAGCCGTACCCTTGCCCTCTGCCCTTCCCATCTTTGGACAGGCCAGGGAGAGCAGCAGAAGGGGTATCACGCCACAGAGACCATGGCTCAAGCCCCAAAATGCTGAGTGACTCTGGGCAGGTCCACGGCTCTCTATGGGTGCTGAGGTGTCTTTCCATTGTGAGTGGTAGAAACTCAACCCCACGCAGTCTAAGCCATTAAAGAGAAGCTATTGACTGCAACATCCAGGGAGGTTGGCCTTCAGGCACAACTGGATCCAGGTCTCACCTAATATCATCAGAATTCTGTCTTTAACTCTTATTCTGTAAATGTGTTTTGTAGAGTGTTGACTTATGCTTGGGTGTTGCAGAACATGTTGGACCATGTAGGAGCCATGTCAAGACATGCTGGGTGTGCTGTACCATGTCAGGGTGTATCATTGCTCTATAGTGTTGTTGCAGCCTAGTCCGGTCCCCTTTATGCCCCCCACCCTCCTTTCTTCTTCTGCCCATGGCCTCCTTCCTGCTATGCTGGGCTTGGAGAAAAGACGTCCAAACCTCTGGCTGGGAGCCACCCTCCATACCCAAAGTCCCTCCTCTATTCCTCTCCATGGACCCTGATGGTCCTCATTCATGTCAGATGCCATTACAGACAAGGACATAGTCTTCTACAAGACCCTGAAGCCCTGGCTGGGTAAGTAACTGTAGGTGGACGGGACGGGGACCAACTTTTGTGGCCAGGGGAAGATTCTGCCCTTGCCCACAGCCTTTGGCTGCCGTACTAGGGGATGGGCTCTTGTTAAGTGTTGGTGACAAGTGGAGACACCACCGTCGCTTGCTGACGCCTGCCTTCCATTTCAACATCCTGAAGCCCTATATAAAGATTTTCAGCAAGAGTGCAAACATCATGCATGTGAGTGCCTTGAACTCAGCATCCCAGCTGCAGCCTTGGGGTGGAGGGATCACATACAATTGGGTCTGGAATGTTGGCTCTCCTGGGTGGGTTTGGGGCCATTGCTCTTCCTCTCTGTGCCTTGATTTCCCCATGAGGCTAATAATCCTCACTAAAAGGTGGTAGGAGCATGTAATGGACTCATGTCTCTGACACTTAGTAGGTGGTCAGAAGGAGTCAATTTCCACATTTTTCTCACAGAAGCCCTGTAAACTCAAGAAAGGAATGATGACACGTGCATAGTAGTCATTGCTGAGTACAGATCACTTCAAAACTAATTGGTTTAGAGCAATAAGGGTTTATATTTGCTAACAAATCTGTGGGACTGTTGGCCAGCCCTTCTGCATGTGGATAGGATCCCTCATGGTATAAGAGCAGCTGTGGGTCAGGTAGGCAGCTTTGCTTGTGCCAGCTCAGTTCTCTCACATATTTGGAGCTTTGCTGGCTTCTGGCTGATTTAGGATGGCCTCAGCTGGGACACCTGGACTTTTCTCCATGTGATTCTCTGCCTCTAGATGACACCCCAGGATTGCTCACATGGCAGAGACAGGATTCCAAGGCAGTGAGAGGAGGATACAATGCTTCTCACTAGTTATTATTATTTATTTTATTTTTGAGATGAAGTCTCGCTTTGTCTCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCTCTGCAACCCCCGCCTCAAGCAATTCTCCTGTCTTAGCCTCGTGGGTAGATGGAATTACAGGCGCCCACCACCATGCCCAACTAATTTTTTGTATCTTCAGTAGAGACAGGGTTTCACCATGTTGGGCAGGCTGGTCTTGAACTCCTGACGTCAAGTGATCTGCCCTCCTCGGCCTCACAAAATGCTGGAATTACAGGCATGGGCTGCTGCACCCAGTCAACTTCTCACTAGTTATGGCCTTATCATTTTCACCACATTCTATTGGCCAAAAAAAGTAAAACGTCCACCATGAATCAATGTGGGGCAAAATAGGCTCCATCTCTTAATGGAAGTTGCTAAAAAATCACATTGCAAAAGATGTGGATGCAGGGAGAAGAGAAGAAATGGAGCCAAGCGTTTTGTGAAACGACTAGGATTTTTTTTTCTCCTGTGAGCTAATAAATTAGCTTGTTACTTTTGCATGGATTCTGCCAGAAGACACGAGACTTCTGGGTCAAAGACAAAAGTTTATTACTCATGTCTCAGCAAGTGGCATGTGCATCTTGTTGGTTTGGATCCTTTCTCTAAGCCACCCAAATTCCCTGGGGTGATAAGGTGGGCTTCTATAGATGCCTGCCATGTAGTATATTTGCATGATGGGGAGGAGCATTAGGCTTAGAGAATCAGCTTTTAGAGCAAGCAGAATAAGCCTAACGTGTGTCCCAGAGGAGCCATTACCTTATACCCCAAGGCTGTTCTCTGCAAACACAATGCTGAGAAATAGCCCAGATTAAGAACCTCAGGGTTGACCGGGTGTGGTGGCTCATGCTTGTAATCCCAGCACATTGGTATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCAGGGCGTGGTGGTGCGTGCCTGTAACCCCAGCTACTCAGGAGGCTGAGACAGGAGAATTGCTTGAACCCAGCAGGCAGAGGTTGCAGTGAGCCAAGACTGTGCCACTGCACTCCAGCCTGGGCAACAGAACGAGACTCCATCTCAAAAACTAGCAAACAAACAAAACAAACAAACAACAACAACAACAAAACTTCAGAGTTTTGCATTCTTGGCATGCTCAGAAAAAAATGTTCAGGGGGATCACAGGGACTTTTTGTAATCAATTTATAACAATGAAGATGAATCAAGATAATATTTATTGAGAACTCATCATATGACAGAAATGATGTAATATGCCTATTCCATGGTGTATGTGGTCTCATTTAATTTACACCGCCTTGTGAAGTAGAGGATATTTTCCACCCTCTCCCCCATGCCATGACAAATGGTGAAACTGAGGGCCAGAGAGGTTAGAGAGATTTCCCAAGTTCACCCAGCTTGTCAGTGAGTCTAAGAGTGGGGGAAAAGGGGTTCTAGCCTGGCTCCCTGGCATCAAAGCAGGTCATCTTGATTGCTATTGAGGATTTGACAGGTGAGACCTAGAGGAGGGCTGTGAGTTGACCAAGGGTACACACAGCTTAGGAATCACAGCTGGGGCTTGAACCCAGCCATGGGATCTTCATCTCCTAATAGTAACAGCTTCCACTCTCACCCAAGCGTAGTCCTCCCTGAGGATGGGGGTCTGGGACAGAAAACCAGGAGCATGCCTCTGGGGGAGTCCATCCTGGTGGTTGGGGTTGCAGGGGGACTCAGAGGAGCCAAGGCCTGGCCCCAGCCCTGCTCCCTTCTCTGGCCAGGCCAAGTGGCAACGCCTGGCCATGGAGGGCAGCACCTGTCTGGATGTGTTTGAGCACATCAGCCTTATGACCCTGGACAGTCTGCAGAAATGCATCTTCAGCTTTGACAGCAATTGTCAGGAGTGAGTTCTTGCCCAGGGCCTGGGAACATGGGATGGAGTGGGGGTGTGGGTGTGGGGAGAGCAAAGCCCAGGGAGACAAGAAGAGCCTTCCTGGAGAGATGATGAGAACTAGGCATTGAAGGACAAAGAAGGAGAGAAGGAGAGAGAGAGAGAGCGAGAGAAAGAGAAGTTTCCTCCAAACAAGTGGAACTGTTTGGGTCAAGGCAAGGAGGCTAAGATGAACAGAGCATGTGCAACAGGCAGTTGGGAGACACTTGGAAATGAAGGTGGAGGGGTTGGCAGTTAACTAGATCTTAAGGATCTTGAAAAGTCAGACAAAGGGAGATGCATTTTATCCAAGGTTCCTAAGGAGCCATGGAGGTGTTTGAGCAGATGAGAGACATGGTCAGTACTGAGCTTGGACACTGGACTCTATGGGACTCTATGGAAGATTGACTGTCATGTAGACACAGCATGCAAGGATGCCAGGGAGAGGAGGTCTGAGTTTGGTGGAGAAAATGGGGCAGATTTGGGAGAAACTGAGTAATAATAGGCAGGAGCAGATGTTTTATAAGACAGAGAGAGGAGATGCCCATGATGGCCAAGCTGTGCCCTGGGGACCTGGGGCAGGAGGCAGCTCACAGAGAGTGGGAGGCAGAGAGTGAAGTGCGCTTGCAGGACACCCCTTTCTGCATGGAATGTGGTCCTGGGATTCTGGCTGGAAGGTGCTCCCAGGCTTTCATGTGGGTAAGGAGCTGCTTCCTCTCTCTGGACTGGCCCTGCAG
Seq C2 exon
GAAGCCCAGTGAATATATTACTGCGATCATGGAGCTCAGTGCCCTTGTAGTGAAACGGAATAACCAGTTCTTCCGGTACAAGGACTTCCTGTACTTCCTCACTCCCTGTGGACGGCGCTTCCACAGGGCCTGCAGACTGGTGCACGACTTCACAGATGCCGTCATCCAGGAGCGGCGCCGCACCCTCACTAGCCAGGGTGTTGATGACTTCCTCCAAGCCAAGGCCAAGTCCAAGACTTTGGACTTTATTGATGTGCTCCTGCTGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526:ENST00000325723:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
NA
C2:
PF0006717=p450=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development