HsaINT0044532 @ hg38
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15623699-15624094:+
Coord C1 exon
chr19:15623699-15623765
Coord A exon
chr19:15623766-15623964
Coord C2 exon
chr19:15623965-15624094
Length
199 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CCTGCCTGGCTGACCCTCAGGCC
3' ss Score
6.65
Exon sequences
Seq C1 exon
GATAAAAATGGTAAAGAGTTGTCAGATGAGGACATAAGAGCAGAAGCTGACACTTTCATGTTTGGAG
Seq A exon
GTGAGTGTCCCAGTCTGGGGCTACAGTGGGGACAGGGGTCTCTCCACTCCAGGGAAGTGGAGGGCCGGCCCTGAATCACTTCATTCTGCCCAACCTCCCCCTCCCCTCAACCTTCCTGAGAGCCTCAATGTATGGGCGCTGTCCACCCTCTGGGTGCTGAAGCAGCCCAGAGACTCAAGCCTGCCTGGCTGACCCTCAG
Seq C2 exon
GCCATGACACCACGGCCAGTGGCCTCTCCTGGGTCTTGTACAACCTCGCGAGGCACCCAGAATACCAAGAACGCTGCCGGCAGGAGGTGCAAGAGCTTCTGAAGGACCGTGAGCCTAAAGAGATTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526:ENST00000325723:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.7=100)
A:
NA
C2:
PF0006717=p450=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATGGTAAAGAGTTGTCAGATGA
R:
CATTCAATCTCTTTAGGCTCACGGT
Band lengths:
194-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development