HsaINT0046159 @ hg19
Intron Retention
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135535097-135536638:-
Coord C1 exon
chr9:135536595-135536638
Coord A exon
chr9:135535168-135536594
Coord C2 exon
chr9:135535097-135535167
Length
1427 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTTTTTTTCGGGTGGCCCAGTGT
3' ss Score
3.04
Exon sequences
Seq C1 exon
ATTTCCACAATAAATACGGTCTTAAAAATGTCTAGTATGACCAG
Seq A exon
GTAAGAACTTCAGGCTCCTCTTGATTTCTTAGGCATTACGTGGGTATAACCGGACGAAACCTGTGTGTGCAAGGCAGAGCAAATTTGTGTCTTGGCGTTGGAACACAGTGCCAGGTTATCGACCATAAAGGGTTGTCGTCTCACTTAGCTACTCATTCTCTCCACCTGTTAAATGGAAAGACTGGCTTTCCATCCAGTTCTGCCCTTGGCTCTGAACCGCAAGAGACGTCTCATCCAGAAGGTGGGCTGCATGAGCGCCGCTGTTTTCTGTGCTTCCCTGAAAAGAATTTGGCCAAAATATAGCATGTGACCATGTCGTTTCTTAGTAGTAAGAATTAGGGTCAACCAAAAAGACAAGAGTAAATGTTCAGTTGGATAGAGTGGGATACTGAAAAAATGTTTTCAATGTTTGTTACAGGGAATGACTCCTGGAAAATAAAGAAGTAAAATAGGTGCGAGGAGATGAGCTTCCTTGTTTTGAGTATTTGTGCTTCTGTGCATTTTCATAATGATTTTTTACTTTTACTAGTAAAAATTAATAGGAATATTAAAGTCCAAATTAAGGGACCTCCCCACAAGTTTTTTATCAACCAAATTTAAGTGATTTTTGTGTCTCTTTTGTTTCTTGTTTTAAAATACATGTGTAGACACACATTTCAGCATGTCCATAACCTTTTCCTGGAGAATGGACAGCTGCTGCTGGCTCTCTGAATAGTTGGCGAGCTTCCTCCTGCTATCCTGCATGGAAACCTTTCCATTATGTTTCGTTGTGTTTCATATTCCTGTTAGTGAGGGCAAGAGTGTGTGATACACTTGGTGGTAACTCTGATTTGTTGTCATGCCTGTTTCTTTTTCTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTACAATCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAACCTCCTGAGTAGCTGGGATTACAAGTGCGTGCCATCACTCCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCATCATGTTGGCCAGGCTGGTCAAACTCCTTACCTCAGGTGATCCACCCACCTCAGCTTCCCAAAGTGCAGGGATTACAGGTGTGAGCCACTGCAGTCGGCTGCCTGTCCCATTTTTAAAAGAATTAGTTTAATAGAATGGCCAGTCTCTGGTTTGCCTCACCATTTTCAGGCTAAGTTCTAAAAATATAACTAGGGTTTGATCTTTATAATCATCAAAAGTTTCTTCACACCTTTATTTGAATGCTTTGATAGCTTCTAAGGAGGCAGTTGCCAGATGAATCCAAGTGTGGGCAGTTGCCTTTTATGTATCCTGCGTCTCTGCCAGTAACTGGGTAATATAGGTAAAGTGTGTTCTTTTTTTCGGGTGGCCCAG
Seq C2 exon
TGTTCAGAAGCAAAGTATTCCTGTGTTGCTGGAAGGCAGAGATGCTCTCGTGAGATCCCAGACGGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-DDX31:NM_022779:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077668=LETM1=PD(6.5=53.3)
A:
NA
C2:
PF0027024=DEAD=FE(13.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)