HsaINT0046163 @ hg19
Intron Retention
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135525621-135526503:-
Coord C1 exon
chr9:135526462-135526503
Coord A exon
chr9:135525686-135526461
Coord C2 exon
chr9:135525621-135525685
Length
776 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGTCTGCTGTCTTTCTGTAGCCT
3' ss Score
8.27
Exon sequences
Seq C1 exon
CTAGCTCTACAAAGCTTTGACACTGTCCAGAAACTGCTTAAG
Seq A exon
GTAAGGCAAACCATGAGTTCCATTTCATCTTGCTTGCTGACTTTGAGGAAGGATTTAATATACTACAGTCTATTCTTTATTTTCAAAGAGATAAGAATTATTTCCTTTTGCCTGGATATCTCTGCTCTCTCTAGGCAGTTTATAGGTTTTTACTGATCTAAACCTACCAATTTCTAGCTTAGCTGAATTATCAGTGACTCCTGGTGCATAAAGTCCTGCAATTTGTTCATCATAGTCACTAGCAAGCCACATACAGAAATTCACAGGTACAGCCTGATGGTGATCCAGTAGAAAGCAACTTAGCTGCAAGTAGGATTTGTTTAAGAAAGGAGAGTGAAGGCTTCAGAATCAAAGCCAGCCAGCTCACCAAATTGGATCATGAATTGATCCATCCTTTCTTTTATTAGGGGTGGAGAGTAGGGAAGGGTGTTGCTTGGGTTTTTATCTTAACCCCAAAAATGGCAGTAGACTTACTGACATGTGTTTTCAGTTCAGGCTCTGTGGGAAAAGAAAGGCAAGCTACTTGAATGATTTAAGAAGCTCACATTTCTCTCTCACTGTGGTAGAAGCTAGTTATATACCTATAATTCAAGTTACTGCTGATAGTGAACATGGGTGTAGCAATGCCTAGGAATTGTGTCTGCACAATAACACCTTATACAATGAGAAGCACCAGTTTTCTCCCATGCCTTGTTTAAGGAAAGGGAATTTGGAATCAATGTCTGATGTTAGTAAAGGGGGCTTTGCACTGACTGTGGTCTGCTGTCTTTCTGTAG
Seq C2 exon
CCTTTCACCTGGATTGTGCCTGGAGTGTTAATGGGAGGAGAGAAGAGAAAATCAGAAAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-DDX31:NM_022779:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027024=DEAD=FE(7.3=100)
A:
NA
C2:
PF0027024=DEAD=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)