HsaINT0046716 @ hg38
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6475837-6476967:-
Coord C1 exon
chr19:6476857-6476967
Coord A exon
chr19:6475938-6476856
Coord C2 exon
chr19:6475837-6475937
Length
919 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGG
5' ss Score
4.23
3' ss Seq
GCCCCGCCATCGCTCCCCAGCTG
3' ss Score
7.34
Exon sequences
Seq C1 exon
AGGAACCTAACGGAGCTGGTGGTGGCCGTGACTGACGAGAACATCGTGGGGCTGTTCGCGGCGCTCCTGGCCGAGAGAAGAGTCCTGCTCACCGCCAGCAAACTCAGCACC
Seq A exon
GTGAGGCGGGGTCCGCCGGGCCGGGGTGGGAGCAGGGCCTGGCTCCGCCCCGGGGGGCGGGACAAGGGGGCTGATTCCTGGCTCTAACCCTACTGCGCGAGACCCGAGGGCGAAGTCCTGGCCCCGCCCCTTCGAAGGTCTTGGAGAGTTGAACTCTGGCCCCGCCCTCGTGGGAGGGGGCTGCGCTGCAGCTCCTCCTTTTTGGGAGTACTGTGCTCAGGCTCCACCCACTATGGGCCGCAACACGTCTGGCTCCACCCCTCCGGACCCTCAGGGACACTGAGAACTAGGGACTTATACACGTGGGAATCCAGGGACCCAGGGACCCAGGGACTCAGGGACTCAGAGATCTGAGGACCCAGGGACCCGAATACCCAGGGACCTAGGAACACAGGGACTCAGATAACAAGGGGCGCAAAAAACTAGAGACCCATACTCCCAGGGACCCTGAAACCCAGGGTCAAAGGCAGACGTGGAGACTGGCTCCACCCCTAGGGGCGGGGCCAAATGATTGCCTTCCGGCTCCACCTCTTTGGGTGGGGTTACGTCTTGGATCCACCCCTAGGGGCGGGACAAGGGCGGTCTACGTCATAGCTCCACCTCTTTCGGGGTGGAGTCAGTGGAGGCTCAGTCCTTGCTCTACCTGCATGGGGAAGACTCAGGGGTGTTGCCTATTAACTGCGCCCCTTACAGAGAGGGATCAGGACGGTATGAGTCCTGGCTTCACCCGCTTAAAGCACTGTAAGTGGCCAAATTCCTGGTCTCCACATGATTTCTAAAGGGGTTCGAGTTGTCACTCATTATCCAGCAGTGGATGGGGAGGGGGAACAGGAGACTGGGGACGTGGGAAATGCAGCTGGAAGAGACCTCGCGCTAGAGGGTCCAGGCCCTGACTCCACGCCCCGCCATCGCTCCCCAG
Seq C2 exon
CTGACCTCGTGCGTCCACGCGTCCTGCGCGCTCCTGTACCCCATGCGCTGGGAGCACGTGCTGATCCCCACGCTGCCCCCACACCTGCTGGACTACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744:ENST00000381480:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214116=DENN=FE(17.6=100)
A:
NA
C2:
PF0214116=DENN=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTAACGGAGCTGGTG
R:
AGCAGTAGTCCAGCAGGTGTG
Band lengths:
211-1130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development