HsaINT0046735 @ hg38
Intron Retention
Gene
ENSG00000205744 | DENND1C
Description
DENN domain containing 1C [Source:HGNC Symbol;Acc:HGNC:26225]
Coordinates
chr19:6477074-6477283:-
Coord C1 exon
chr19:6477218-6477283
Coord A exon
chr19:6477128-6477217
Coord C2 exon
chr19:6477074-6477127
Length
90 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
CCTGCCAATACCCCCACCAGCTT
3' ss Score
2.44
Exon sequences
Seq C1 exon
GGCAGCGGAGTGACGGTCTCCAGCGGGCAGGGTATCCCCCCCCCTACCCGGGGGAATAGCAAGCCG
Seq A exon
GTGAGCGGGGCTCGGGGACCCTGGAAGGTCGGGGGTCCAGGTGAGGCCAGCCTCCTGACTGATTGATCCCCCTGCCAATACCCCCACCAG
Seq C2 exon
CTTTCCTGCTTCGTGGCCCCGGACTCCGGCCGCCTGCCATCCATCCCTGAGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205744:ENST00000381480:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0214116=DENN=PD(20.8=72.7)
A:
NA
C2:
PF0214116=DENN=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGGAGTGACGGTCTC
R:
GTTCTCAGGGATGGATGGCAG
Band lengths:
119-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development