HsaINT0048108 @ hg19
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:17217]
Coordinates
chr21:47981661-47983845:+
Coord C1 exon
chr21:47981661-47981718
Coord A exon
chr21:47981719-47983770
Coord C2 exon
chr21:47983771-47983845
Length
2052 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CATAGCTCTCCTCCTTCCAGATC
3' ss Score
10.42
Exon sequences
Seq C1 exon
GGTTCGTTTGGTAGAACGGGGTTCTCCGCACAGCCTGCCATTGATGGAGTCTGGAAAG
Seq A exon
GTAGTGGAAACCAAGACGCGTGCATTCTGAGTCGCGTCTGAGACCTTTGTCTGAAGCATCACCCCGTGGAGGGTGCTGGGGGCTGCGGCTCTGATGAACACAGGTCGACTTCTGGTTGGGGTGGGCTCGGCTGCTGCAGAAGTCTCCTTCCCTCCTTTGTGGCTGGTATATAGAATTACTTAGTTATGTTTTTAAACACACATCTGAGCTCAAAGCCAAGAAAGGGAGAAGTTCAGGTGCAGGAATAAAGAACTCCCGCTGGGTGGGTGGCAGGCCTCAGGCCTCTGGGGCCAGGGCCATGGAGGGGGGTTCCGGCCCACCCACACATTTAGAGTTAAATGGAGTGGCCCTGGCCCTAAGTTGGAGATGGCAAAATCTCATGCCCTAGTTTAGGGTGTCAGCAGGGAAGAGGCCCCCAGACCCTGTCGGGGATCTGGGGGATCCTGAGATGGCCCGAGGACTCCCAGGAAAAAACTGAGATGCTGCAAGAGGTCAGCAGACATAGGCACAGAACAGCATCCTCTGAACCAGGAAGGGTTCAAAGGAAGGAGGAAAAGCCACACAGCCCAGGAAGGCAGCATGAAGAGTAAGCCAGGCTTGATATGAGTCGGGGACCCTGGTGCCTTCACAACCGCAGAGGCAAGGGAAGGAGCTTGGCCACCCTGACTCCGTTCACTGCCATGGCCACAGCCACCTGTGGGGAGTCAGAGAGGGGTCCAGAGAGGGACCCAGCCAAGCCATGTGATGTCCAGGATACAGACTCCTGCAGGGCAGCAGGGGTGAGACTGCGGACAGAAGGCACAGCTGCTGTGAGGGTCTCGAGGTGGGAGCTACAGGGAGGCCAGTGGGACTGGGCTGAGTGTGGGGAGCAGAAGGAGTGCGTGAGTGAGTGAACTCACATGCAGGTGCAGGGGCTTGAAAAGCTCCCTTCCCGTGTCCCCTGTTACAGTCACTTCAGGCGGTAGACCAGCCGAGAGTGGAGTCGGGTGAGCTTAGTGGACAGCACATCTGTGGGAGCCGTGGGCTGCTGCACGTCCTCCCTTCTCTGAGCACAGGGACATGTGAGCCGCCATCGCACACAGCTCTGCATCATCCTTGGTGTAAACTCAGCGGGTTTCCCTGGGTCATGGGGCCTCCACGTCGCTCTTTTCCCTGCCCTGCCATGTACAGCCGCACTGTAATTGTTTAGCTCACCCCCTTTTATTGGACGTTCTTTCCTATTTTGCTGTTACAATCACTTGGGCCTGATAGGTTTGTGTCCTGGAAAGAGCTCTGGTTTTGGGGCTCAGCTGGGACATGCAGGGAGAAGATGGAGGCTCCAACAGCATCTGGGGAAACAGAACAGTCCCACTCCGCCGGGGAGGGTCTGGCGGTAACCGTAGCTCACACCTCCCTGTGGCCCGTCGTCCCCTCCTCTTGCCTGCCCTGAGCCTGCAGTGTCATTGCCCCCATTTCATACGTGAGGAAACTGAGGACACAGAACAAGCATCCAGGCCTTGTGCAGTCAGGTGGTCTGACCTGAGCCCAGTGAGGGAACACTGGGACCGGGCCTGGGAGGCCAGGTAAGAGATGGTGGCCTCTTGCCGTCCTGAATTGGCACAGAGCCAGTGCTCAGTGGTTGGACTGACTCGGAGTCACGGGCAGGAAGAACTTCCTCATGGTCAGGTTCCTGGCCAAGAACTAGGACAGACATGTGCCTCCTGCAGGGCTGGGCACAGCAGGGTCACTGCACCCCTGGATGGATGCCCATCAGGTGCGCTGGCATCACCTGGCTGATTGTCTTTGTAGGCTTAGTGACCCTCTGCCCCTCCTGACACCCAGAGACGGGATCCCTTCTCAGGAACTGGAGTCATTTTGCTTATTTCTATTAACATCTCTTATTTCTTTCAAAATTCAAAGTCAAATTTGGAGCGGCCTCTAAACTTCCTGACCTGACATGAGCACATCAGTCCTGCAGGCCAGCTTCTGAGGGACGTTATTTTAATGTCACTGAATCAAGAGAGTCTCGTGTCATGTTTTCTTTAACAAGGGACATAGCTCTCCTCCTTCCAG
Seq C2 exon
ATCCTCCCCGGCGTGAAGGTCATCATCGCACACACCGAGACCAAAGGACCCTTGGGAGACTCACACCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305-DIP2A:NM_001146116:34
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=NA C2=0.172
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)