HsaINT0048131 @ hg19
Intron Retention
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51116985-51118669:+
Coord C1 exon
chr12:51116985-51117106
Coord A exon
chr12:51117107-51118557
Coord C2 exon
chr12:51118558-51118669
Length
1451 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GCTGTCCATTTGTTTTCTAGGTC
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCATTGAGTTAATCGCCGCCTTCTATGGCTGCCTGTATGCGGGCTGTATACCTGTGACCGTCAGACCTCCACATGCTCAGAACCTCACGGCCACGCTGCCCACTGTCCGAATGATTGTTGAT
Seq A exon
GTAAGTACCAGCTGTATCTTGCCTTGTCCTCATCTCCTAAAATCCAGATTCAGACAACTAAGGATCCTTACTAATTTTCCAATTTTGTTAAGTCAGGAATTCAAATTTGTCTTCTGGAGACTACCTCCTTTTTGTTAATCCAGCCAAAGCAGTCATCATTATTCAGTGAAGGAACTGGGGGAAAGTGGTTATTGGTGAGATACAGAATTGTGTGCAGTTATCATGAACATTAAAGAGGTGAAGCAGCCATTAGTATTTCTACAACAAAAACACAAAAGGTAGCCAGGCATTGTGGCACTTGCCTGTAGTTCCAGCGACTCAGGAGGCTGAGGTGGGAGGATCCCTTGAGTCTGGGAGGTGGAGGTTAGAAGTGAGCTGAGATTATGCCACTGCACTCCAGCCTGAGCAGACCCTGTCGCCAAAAGAAAAAAAAAAAGTGTTTCCCCCTCCCTTCTGTCTAAAACGTGCTGTCTGATATTTTTCCTGCAAAATTATCTAGGCGATTTTAAATGCCAAACTGAATTATCCCCAGTGTCAAGTCACTTCTATTTTAGTTACTTTTGTGAATTTACTTGGTATAGCATTAAAAGGTGTCCAGAACTTGCTCTGGAGATGATAGAAGTTTTTATAGGATATGAGAGTTAAAGAAAATAAGATAAGTGTGTATTGCATGAGATCCTAGTGTTTACAGCAAGGGGAAGCCTTGGCCAGTGCTGACAGATTACAAAATTCCAGTTCATGTAGCATTTGCTTCTCTGAGAACTGCTGCTCTGTCAGCAAAAATGGAGCCCACAGTATAAAAGCCATGATCACCATAGATGATTTTATTACAAAGTGTAATTCAGCAAAATGCCCTTGTTATATTCTACAAAGTGGGCCAGAAAAGCAGGGAGGGGAGTTGCTGTTGATGCAGTTCGTGGGCAAAGTAGGTCATAGGTCACTTTGCATTTCTGTGTATAGCTGGGCAAGAGAACCTAGTTTCTGTGAGAGCTTATATCAGCATCAGGGTTCCTTAGGTTCAGTGTATGGGCTAGGTGTAGTAAGTCTCATCATTCACTAGAGACTGGGGCAGTCTCCTTCAAACATGGTTATCCGATTCTTCTCATTTCCTGAGCACTACAAAACCCACATCTTTATTTAATTGTGGTCTTCATGAAATCTTGGGATTGTGGGATCTATACTGAGATTATAACTGAAATACTTTGAGAATCACTGTTATAAATGATACAGTGTATTGTGAACAGGTCCATCATTCTGAGAGAATTAAATGTCACACATTTCCAGAAGGAAACATGCAAGGGAGTAACACTGACCTCGTCTGTCTCACATGTGTTCTTTGAAACTGTCCTGTCCAGTGTGGTACATGAGTGGCTTTTAGCAGCAGCCAGGGCCTGTGGTGCCATGTTGGGGCTGAGCCTCCTGATGCTTATTGCTGTCCATTTGTTTTCTAG
Seq C2 exon
GTCAGCAAAGCAGCCTGTATTCTCACCAGTCAGACCCTAATGAGGCTACTGAGGTCCCGAGAGGCAGCAGCAGCTGTGGATGTGAAAACCTGGCCAACCATCATTGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-DIP2B:NM_173602:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGAGTTAATCGCCGCCT
R:
CTGTGTCAATGATGGTTGGCC
Band lengths:
234-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)