HsaINT0048801 @ hg19
Intron Retention
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:2926]
Coordinates
chr10:124342116-124344825:+
Coord C1 exon
chr10:124342116-124342439
Coord A exon
chr10:124342440-124344786
Coord C2 exon
chr10:124344787-124344825
Length
2347 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TGTCTCTGTTGCAATTACAGACA
3' ss Score
6.94
Exon sequences
Seq C1 exon
GACCTGAATCCAGTTTGGCCCTGAGGCTGGTGAATGGAGGTGACAGGTGTCAGGGCCGAGTGGAGGTCCTATACCGAGGCTCCTGGGGCACCGTGTGTGATGATAGCTGGGACACCAGTGACGCCAATGTGGTCTGCCGGCAGCTGGGCTGTGGCTGGGCCACGTCAGCCCCAGGAAATGCCCGGTTTGGCCAGGGTTCAGGACCCATTGTCCTGGATGACGTGCGCTGCTCAGGCTATGAGTCCTACCTGTGGAGCTGCCCCCACAATGGCTGGCTCTCCCATAACTGTCAGCACAGTGAAGACGCTGGTGTCATCTGCTCAG
Seq A exon
GTGGGCCTCCAAGACCTTGGGCTCCCTCTCTTGGGGTAGATTTTGCTCAGGAAGCGAGGTCTCATTATGTTCTGATCTCCTCACTCAGAGCTTTTTCAGCCTTTCCTATATATCTGATATCTCCTTAGCTCTCTCCTAGGAAACTGCATGAGTCTTCATTGCCAGGTTTTGAGGAGGTCAGGTAGGACAACGGGCCAAAGTGAAATAAGGGTCACGCCTTTGTTCACCTACCGAGGCAGCGCAAGCAGAGGGAGAAGAGGAAAGTGCCAGGTCTTTGCCTTTTAGTGTGGCTGGAAAGGAATAGCTGGGGCTGGTTTGTTCATGAGGAAAGAGGCTGATTTGGGTCTTGGCTTTGCAGGCTGCATAGGACCATGGTGCAGGCGTCTGCTCAGCTTCTGATGAGGGCCTCGGGCTGCTTGTACTCCTAGCAGAAAGGGATGGGGAGGTGGCCTGGGCAGAGGTCACAAGGTGAGGGAGGAAGGAAGAGAGAGCAAGAGGGAGGGCTCAGACTCTTCAACCACCAGCTCTTGCTAGGAACTAAGAGAAGAACTCACCCCTGACCAGGGAGGGCACTAAGTTATTCATGCAGTGTTGGTCTCCATGACCCAGACCTGGTGCATCAGGCCTCACCTCTAAACTTGGGGATTCAGTTGCAATATAACACTTGGATGTGACAAGCCTCTAAAGTATAGCACCCTGGCTCTCCAGGGTTCCATCTTTCCCCTACTGAAAGATTTTGCAAAGGGTTACATGGATGAAGCACATATAGAGGATGGGGGAGGGACTGTCTCCCTGGGAGGAGCCCAGAACCACAGGCTCCTGCTAGGAAGCGCGGTCTTCTGCTGAGGCCCAATAAGGTGATGTCTTAATAGAGACACAAGGCTAGGAGTGCGGATGTGTGTCTGTCCCTCTCTGGCCTGAGATTTGGGGGCTGTGAGTCCTTGACCACAACTCCCTCCAGAGCACTGCAGTGTCTTGCCTGTGCACCGGTCTGGTGTGGAGTGTGCAGTCCCCATGAGGTCTGCTAGGCAAAGCATTGTTATGAACGCCTGTGGGCTGGACTGGAACATCAGAGGCAGGACTTTGGCTGGAGTGGCCTCCTCACATTTGCTAACTCAGGGACTGCTAAGACATGCAAGGGAGAGGGTAGGTTTTGTGTCAACCTGATTACTATGGGCAGACACAAGGTTAATCACCTTGGAGTTGGCAATAGTGGACAGGATCTGCCCAGACACCCTCCAAGGAGCATCTCTGTGGGGACATGCATGGCAATGCCCTCCCTCTGTGATGGGGACCTAGGGTGGACTGAAGGCATGATCTGTTTAGTTCCTTCCACCTTTGTTCCGATTTTGCCAGCTTCTGTATAGTGCATCTGATCTGACCTCCTCTTTCTCACAGCTGCCCACTCCTGGTCGACGCCCAGTCCAGGTGAGTCCCCAGTGTCCTTCCTTGGGATGTCCCTTCTCTTTCTGTATAATTATCCCTTTCTGCACTCCACAGAGCCCTCGTTCTTCTCTGAGTGAATACTACATGGCATACAATTTTCCCCTGCTCTGTAACTGAGACCCTGGAATGGCGCTTCTGAACCAGACATAGGGTTCAAGAGGCTTCTGTCTTCTGTTCCATTTATCTCAGCTTTCATGAAGCAGTTTCATACTGTCCCAGTGGCCAACCCTTAGAGGTTTAGGAAGTGGCCTCATATTTAAATAGCTTTGACCCTTTTCTATTCAGAGCTGATATGACCTTCCTGAGAATTGAGAGTGATTGCCAAAGTCTCCTCGGAAGCCAATGTCAGCTAAAGCCTTAAACATGGCTGCCGCCATGGGCAAGCAATGTCAGTGCAGGCCTGACACCTCCCTTCCTCACTCCTTCCAACACCCAGATTCTGCAGCGCTACATGTGCATCCAGAAGAGGCATAGGCCATGCTCGGGCAGGGAGAGGGATAATAAATATTTCTGGTGCCTCCACTTACTGGGAAACTTGATACCCCTTTGGTCAGCTCCTTGGTTTCCCTAACGTTTTAGCTCGAGCTAGTAGAGTGTCAGCAATGGTGTTAGATGTACCCGTCAGTGCATGTGTCAGTGCATGGAACAGGCTAACCCTTTGTGACTGAGAAGAGGACATCCCACACTTCAGAGGCAGGAGGGATCGAACTGGTCTCCAGCAAGGCTTATGTCCCTTGCTGAGCTTGCTGAGCTGCAGACTTGGGCAGACACATGGGGAGCAAAGTGGCAGGAATCAGAAGTGGGGTAGTTTTCATGATGCTCGCCTTCTCCGGAGACTTTTCCTTTTGGAGATTTTCACCATCAACTTTAATTCTAGCCTTTGTCTCTGTTGCAATTACAG
Seq C2 exon
ACACGTTGCCGACCATCACCTTACCTGCATCGACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-DMBT1:NM_017579:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.175
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)