HsaINT0049237 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123845600-123846154:+
Coord C1 exon
chr12:123845600-123845869
Coord A exon
chr12:123845870-123845970
Coord C2 exon
chr12:123845971-123846154
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCACCTTTCTTGCCGTCCAGTAT
3' ss Score
6.35
Exon sequences
Seq C1 exon
AGTCGACTGGATGCTCCTGTACCAGGGCATGGTGGTGCTGGCCGCTAGCCAGGTGTGGTGGACCTGGGAGGTGGAAGACGTCTTCCACAAAGCGCAAAAAGGGGAGAAGCAGGCCATGAAGAACTATGGCAGGAAAATGCACCGGCAGATCGATGAGTTGGTAACGCGCATCACCATGCCGCTAAGCAAAAACGACAGGAAAAAATACAACACTGTTCTCATCATTGATGTGCATGCCAGAGACATAGTTGATTCTTTCATAAGAGGCAG
Seq A exon
GTGAGCATTTTCCGGGGTCACTGGCATTTCAAAAGGGACCCTTTGTGGTCCGCTGATCTGTCTCAACGGTTTCCACTTCCTCCACCTTTCTTGCCGTCCAG
Seq C2 exon
TATCCTGGAGGCCCGAGAGTTTGACTGGGAAAGTCAGTTGCGGTTTTATTGGGACCGGGAGCCGGATGAGCTGAACATCCGCCAGTGCACGGGAACCTTTGGCTACGGCTACGAGTACATGGGCCTGAACGGCAGGCTGGTCATCACGCCCCTCACCGATCGGATTTACCTGACGCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(11.3=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGCGCAAAAAGGGGAGA
R:
GCTCCCGGTCCCAATAAAACC
Band lengths:
246-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development