HsaINT0049294 @ hg19
Intron Retention
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21628826-21630640:+
Coord C1 exon
chr7:21628826-21629021
Coord A exon
chr7:21629022-21630535
Coord C2 exon
chr7:21630536-21630640
Length
1514 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TAATAATTGTATTTTAATAGCTA
3' ss Score
4.2
Exon sequences
Seq C1 exon
ATTTTTGGGCAATCCTGATCACGCTTTAGTTTATCAAAAGTATGTTGAAATGACCACTTTGCTTGATCAATTTGAAAGTCGTATCTATAATGAATGGAAAAGTAATGTGGATGAAATCTGTGAATTCAATTTGAATCAACCCTTGGTTAAATTCAGTGCCATAAATGGTCTTCTCTGTGTCAATTTTGACCCAAAG
Seq A exon
GTAGGGATTTGATTTTTTAAGATGATTTATAAGTGCCCTTTTTATTATAAGCCTATTTCTGATATTTCCAGTCATTTGTAATTTACATTTGGGAAAATGTCAGAGTTGTGAGGACTGTAACTGTAAACAATTTCTTACAGGTCTTCATTGTAGAGATTTGTTTCTCAAATTCTACTAATTACTCTATTAATTTGTATTGTAATTGTTTCTTTACCACGCCACCCTCACTAGATAATGAGCCACTGAGAGTAGCATCCGTTTCATTGCATCTTTATGCTCTATGTTTCTAGTTTAGTGTCTGGTACTTGGTGACAGTTAGTAAATGTTAGCTCAACTGAATTGAATCATTTGTCTTTGCCGGACAGTTTCTGGCTTAAATATATTCATAACATACACCAGTGTTTTAGTTAAAATTTCATCACGTAAGTTAAGATTTGGGGAATCAACAGAATACACAGAATGAAAGACACGTCACGTTTTTGATGAGCACTGGTAGATTTTAATTTATTGTCATTTCTTTCAAAGGGACAATAAGCTTGTATATGGTAATTAAATTGATGGTAATTTTAAAAAACATAAAACATATTAATATAAAAAATATTAAGTTAAATAATGTCCAGGATGAATATTATCTTTATTGAACAGGTCTTTTGTTAATGCATGGTAAGTCATGTAACAAAGGAAATTTCATATATTTTCTCAATTCTCATAATTTCATTACATGTTATGTAACAATGGGATTTTTGTTACCATTTATGTATGTGTATGTGTATATAATTATACAATATGTGCATATATTTAATCAATGCTAGATGTGCATGTATATATGTATGTATATGCATTGTATATATTTTAAACAAACGATCTCCAAGTCTGGCAGCTTGCTAGATATGAGACATAAAATAAGCTTTCTTTTCTATTTACCACCATGGGTATGCTTTAGGGTAAGGGGCAAGCTTATAAGAATATCTATTTGTAATTTCCATGACAAAACACAAAATGCCTTAAACATCTAGCTGAATTTTTAGGGGATGAAGATTATACATTCACTATTAGTGATTACCTGGAGTCTCTCATGGCAGTCAAAATGCATGCCTAGGAAGTGGGAAAGTTAGCCTCACTGAGTTGGATAAGCATACTCTGCACCCAAATTCTGATCTGTTTCCCTAAAATATGTACAGAGAATAGTTGACTTTATTTTGCTAGTAAAACTCAGCACACATACCTAAATATATGACATAGTTAACTGAGGATTCGTTCTACTTTCTGATTTCATAAAACCAATTTATAGAAACTAATTTCTTGAGATGTTTAAGGATAATTCATATACCTTTACTATATTATGAATGTATGATTTTTGTTTTTAAAAAGTATATGAAACAAAAGTCTATTTACCTTGATTTGGAAATATAGTAATACTTGGATAACATCTTAAGTATTTCAAGTTAAACTTGAGTTAAAATAGAATGACATTATGAAAATATGCAATAATTTTAATAATTGTATTTTAATAG
Seq C2 exon
CTAGTGGCTGTATTGAGAGAAGTGAAATATCTTTTGATGTTGAAGAAACAAGACATACCAGATTCAGCTTTAGCCATCTTCAAGAAAAGGAACACTATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTGGGCAATCCTGATCACG
R:
ATAGTGTTCCTTTTCTTGAAGATGGC
Band lengths:
294-1808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)