HsaINT0051898 @ hg38
Intron Retention
Gene
ENSG00000203909 | DPPA5
Description
developmental pluripotency associated 5 [Source:HGNC Symbol;Acc:HGNC:19201]
Coordinates
chr6:73353853-73354295:-
Coord C1 exon
chr6:73354114-73354295
Coord A exon
chr6:73354033-73354113
Coord C2 exon
chr6:73353853-73354032
Length
81 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCATCTCTTTTCCCCAACAGGCC
3' ss Score
11.1
Exon sequences
Seq C1 exon
CCTGAGCCTCGGCCGGCGTGATTAGGCCTGGTTTGCGCTGGAGAGTGGTCTTGGTTGTGAGGGTCATAAGATGGGAACTCTCCCGGCACGTAGACATATCCCGCCGTGGGTGAAAGTTCCCGAAGACCTGAAAGATCCAGAGGTGTTCCAGGTCCAGACGCGGCTGCTGAAAGCCATTTTCG
Seq A exon
GTGAGTGTGCCCAGTACTGGCGGGCTGCCCCGGCTCGGGAGTCTCAGCCGGCCCGGGGATCTCATCTCTTTTCCCCAACAG
Seq C2 exon
GCCCGGACGGATCTCGAATCCCTTACATCGAGCAGGTGAGCAAGGCCATGCTCGAGCTGAAGGCTCTGGAGTCTTCAGACCTCACCGAGGTCGTGGTTTACGGCTCCTATTTGTACAAGCTCCGGACCAAGTGGATGCTCCAGTCCATGGCTGAGTGGCACCGCCAGCGCCAGGAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203909:ENST00000370370:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(28.3=39.5)
A:
NA
C2:
PF0001324=KH_1=PD(69.8=60.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGTGTTCCAGGTCCAGA
R:
CACTTGGTCCGGAGCTTGTAC
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development