HsaINT0052464 @ hg19
Intron Retention
Gene
ENSG00000175065 | DSG4
Description
desmoglein 4 [Source:HGNC Symbol;Acc:21307]
Coordinates
chr18:28971041-28972303:+
Coord C1 exon
chr18:28971041-28971175
Coord A exon
chr18:28971176-28972117
Coord C2 exon
chr18:28972118-28972303
Length
942 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
AATTGATCCTTGCATTTTAGTAC
3' ss Score
4.95
Exon sequences
Seq C1 exon
CAACACAGTATGTACAACCTGGTTGTGAGAGGCTCAGATCGGGATGGAGCTGCAGATGGACTGTCTTCTGAGTGTGACTGTAGAATCAAGGTTTTAGACGTCAACGATAATTTCCCCACCTTAGAGAAAACTTCA
Seq A exon
GTAAGTTTGTATTCTTATCTTCCTTTTTCCATAAGTGTCAATAATCAATTTGCATAAGTGTCAATAATCAATCATGCTGGCTCATGAGCCTGGTTCTGTCCTATGTGTGGACATACTCAACTTTGTTATAGAAACTTTGGAATTTCTTATGTATACTAATATACCTTCAAATTGTATGTTTGTCTTTGACTCACTACTCCAAACAAGCCTTCTCTGTGAAAGCAACGAACTATCTATTCTGTATACTCTATTCACAGAAACACAGAAATCTGTTGATCTAACTCTGGGAATAACATAGCAACATTAATGTTTTTGTATATGCCTCATGATTTGCTGAATGAATTCTACTAGAGTCCCAGACAGTCTCAACTTCCATTTTCATCTCTAAGCATAAAGAAGCATAAAATCCACACTAGCAGGGCCAAATCTGGCTTGCTGTCTGTTTCGGTTTAAAAAAAAAAACAAAAAAACAAAACAAAAAACGTGTTATTGGAGAGCATAGCTGTCCTCATGCCTTTACATATTGTCTATGGGGGCTTTGTGCTGCAACAGCAGACGTGAGGGGTTGCAACACCAATTCTCTGGCCCACAATATCTAATATATTTACTATTCAGCCCTTTACAGAAAAAAATCTGGTCCTCTATCTAAAAGAAAAGAATAAATAAAGAAAATTAACAATAAGCAAAAATAAATAAATAAATAAAAGAGAAAGGAACAAAGTGCTAATTTGACCTTGATTTTACATACAGCACATGAATGTCAGTTTTATTATCTTATAATCATTTTATTCTTATTCTCCTGATTGGACTATGGGCATTTAATAATGGTGCAAAAATCATCGACATAGTTTGTTGTTAGTATTTTAAATAATAATAATGTGTTTTAAGTACGTTTCTTCTTTTGAAAATTCATTGACTACAAAATTGATCCTTGCATTTTAG
Seq C2 exon
TACTCAGCCAGTATTGAAGAGAATTGTTTAAGTTCGGAACTGATACGATTACAAGCAATTGATCTTGATGAAGAAGGCACTGATAACTGGTTGGCTCAATATTTAATTCTCTCTGGAAATGATGGGAATTGGTTCGATATTCAAACAGATCCACAAACCAATGAAGGCATTTTGAAAGTTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175065-DSG4:NM_001134453:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(31.3=68.9)
A:
NA
C2:
PF0002812=Cadherin=PU(58.7=98.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACAGTATGTACAACCTGGT
R:
TGACAACTTTCAAAATGCCTTCA
Band lengths:
319-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)